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**“Prediction of Femoral Head Coverage from Articulated Statistical Shape Models of Patients with Developmental Dysplasia of the Hip,”** In *Journal of Orthopaedic Research*, Wiley, 2021.

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**“Leveraging Unsupervised Image Registration for Discovery of Landmark Shape Descriptor,”** In *Medical Image Analysis*, Elsevier, pp. 102157. 2021.

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**“Quantifying the spatiotemporal influence of acute myocardial ischemia on volumetric conduction velocity,”** In *Journal of Electrocardiology*, Vol. 66, Churchill Livingstone, pp. 86-94. 2021.

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**“Estimation and validation of cardiac conduction velocity and wavefront reconstruction using epicardial and volumetric data,”** In *IEEE Transactions on Biomedical Engineering*, IEEE, 2021.

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**“Reducing Line-of-block Artifacts in Cardiac Activation Maps Estimated Using ECG Imaging: A Comparison of Source Models and Estimation Methods,”** In *Computers in Biology and Medicine*, Vol. 136, pp. 104666. 2021.

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**“Personalized Virtual-heart Technology for Guiding the Ablation of Infarct-related Ventricular Tachycardia,”** In *Nature Biomedical Engineering*, Vol. 2, pp. 732–740. 2019.

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[Pat2016a] Y. Pathak, O. Salami, S. Baillet, Z. Li, C.R. Butson.
**“Longitudinal Changes in Depressive Circuitry in Response to Neuromodulation Therapy,”** In *Frontiers in Neural Circuits*, Vol. 10, rontiers Media SA, July, 2016.

DOI: 10.3389/fncir.2016.00050

[Pol2016a] I.A. Polejaeva, R. Ranjan, C.J. Davies, M. Regouski, J. Hall, A.L. Olsen, Q. Meng, H.M. Rutigliano, D.J. Dosdall, N.A. Angel, F.B. Sachse, T. Seidel, A.J. Thomas, R. Stott, K.E. Panter, P.M. Lee, A.J. Van Wettere, J.R. Stevens, Z. Wang, R.S. Macleod, N.F. Marrouche, K.L. White.
**“Increased Susceptibility to Atrial Fibrillation Secondary to Atrial Fibrosis in Transgenic Goats Expressing Transforming Growth Factor-β1,”** In *Journal of Cardiovascular Electrophysiology*, Vol. 27, No. 10, Wiley-Blackwell, pp. 1220--1229. Aug, 2016.

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[Raj2016a] M. Raj, M. Mirzargar, R. Kirby, R. Whitaker, J. Preston.
**“Evaluating Shape Alignment via Ensemble Visualization,”** In *IEEE Computer Graphics and Applications*, Vol. 36, No. 3, IEEE, pp. 60--71. May, 2016.

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[Ros2016a] P. Rosen, B. Burton, K. Potter, C.R. Johnson.
**“muView: A Visual Analysis System for Exploring Uncertainty in Myocardial Ischemia Simulations,”** In *Visualization in Medicine and Life Sciences III*, Springer Nature, pp. 49--69. 2016.

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[Ton2016a] X. Tong, J. Edwards, C. Chen, H. Shen, C. R. Johnson, P. Wong.
**“View-Dependent Streamline Deformation and Exploration,”** In *Transactions on Visualization and Computer Graphics*, Vol. 22, No. 7, IEEE, pp. 1788--1801. July, 2016.

ISSN: 1077-2626

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[Ara2015a] K.K. Aras, W. Good, J. Tate, B.M. Burton, D.H. Brooks, J. Coll-Font, O. Doessel, W. Schulze, D. Patyogaylo, L. Wang, P. Van Dam,, R.S. MacLeod.
**“Experimental Data and Geometric Analysis Repository: EDGAR,”** In *Journal of Electrocardiology*, 2015.

[CIBCData] CIBC.
Note: *Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software.html*, 2015.

[Cleaver] CIBC.
Note: *Cleaver: A MultiMaterial Tetrahedral Meshing Library and Application. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software.html*, 2015.

[Gao2015a] Y. Gao, L. Zhu, J. Cates, R. S. MacLeod, S. Bouix,, A. Tannenbaum.
**“A Kalman Filtering Perspective for Multiatlas Segmentation,”** In *SIAM J. Imaging Sciences*, Vol. 8, No. 2, pp. 1007-1029. 2015.

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[Gil2015a] K. Gillette, J.D. Tate, B. Kindall, P. Van Dam, E. Kholmovski, R.S. MacLeod.
**“Generation of Combined-Modality Tetrahedral Meshes,”** In *Computing in Cardiology*, 2015.

[ImageVis3D] CIBC.
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[Joh2015c] C.R. Johnson.
**“Computational Methods and Software for Bioelectric Field Problems,”** In *Biomedical Engineering Handbook*, 4, Vol. 1, Ch. 43, Edited by J.D. Bronzino and D.R. Peterson, CRC Press, pp. 1--28. 2015.

[Joh2015d] C.R. Johnson.
**“Visualization,”** In *Encyclopedia of Applied and Computational Mathematics*, Edited by Björn Engquist, Springer, pp. 1537-1546. 2015.

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[Map3d] CIBC.
Note: *map3d: Interactive scientific visualization tool for bioengineering data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software.html*, 2015.

[Mcd2015a] K.S. McDowell, S. Zahid, F. Vadakkumpadan, J.J. Blauer, R.S. MacLeod, N.A. Trayanova.
**“Virtual Electrophysiological Study of Atrial Fibrillation in Fibrotic Remodeling,”** In *PLoS ONE*, Vol. 10, No. 2, pp. e0117110. February, 2015.

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[Mcd2015b] K. S. McDowell, S. Zahid, F. Vadakkumpadan, J. Blauer, R. S. MacLeod, N. A. Trayanova.
**“Virtual Electrophysiological Study of Atrial Fibrillation in Fibrotic Remodeling,”** In *PLoS ONE*, Vol. 10, No. 2, Public Library of Science, pp. 1-16. May, 2015.

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[Ogu2015a] I. OguzI, J. Cates, M. Datar, B. Paniagua, T. Fletcher, C. Vachet, M. Styner, R. Whitaker.
**“Entropy-based particle correspondence for shape populations,”** In *International Journal of Computer Assisted Radiology and Surgery*, Springer, pp. 1-12. December, 2015.

[Par2015a] B.R. Parmar, T.R. Jarrett, E.G. Kholmovski, N. Hu, D. Parker, R.S. MacLeod, N.F. Marrouche, R. Ranjan.
**“Poor scar formation after ablation is associated with atrial fibrillation recurrence,”** In *Journal of Interventional Cardiac Electrophysiology*, Vol. 44, No. 3, pp. 247-256. December, 2015.

[SCIRun] SCI Institute.
Note: *SCIRun: A Scientific Computing Problem Solving Environment, Scientific Computing and Imaging Institute (SCI), Download from: http://www.scirun.org*, 2015.

[Seg3D] CIBC.
Note: *Seg3D: Volumetric Image Segmentation and Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.seg3d.org*, 2015.

[Bla2014a] J.J.E. Blauer, D. Swenson, K. Higuchi, G. Plank, R. Ranjan, N. Marrouche,, R.S. MacLeod.
**“Sensitivity and Specificity of Substrate Mapping: An In Silico Framework for the Evaluation of Electroanatomical Substrate Mapping Strategies,”** In *Journal of Cardiovascular Electrophysiology*, In *Journal of Cardiovascular Electrophysiology*, Vol. 25, No. 7, Note: *Featured on journal cover.*, pp. 774--780. May, 2014.

[Bro2014a] J. Bronson, J.A. Levine, R.T. Whitaker.
**“Lattice cleaving: a multimaterial tetrahedral meshing algorithm with guarantees,”** In *IEEE Transactions on Visualization and Computer Graphics (TVCG)*, pp. 223--237. 2014.

DOI: 10.1109/TVCG.2013.115

PubMed ID: 24356365

[Eic2014a] S. Eichelbaum, M. Dannhauer, M. Hlawitschka , D.H. Brooks, T.R. Knosche, G. Scheuermanna.
**“Visualizing Simulated Electrical Fields from Electroencephalography and Transcranial Electric Brain Stimulation: A Comparative Evaluation,”** In *Neuroimage*, 2014.

DOI: 10.1016/j.neuroimage.2014.04.085

[Ere2014a] B. Erem P.M. van Dam, D.H. Brooks.
**“Identifying model inaccuracies and solution uncertainties in noninvasive activation-based imaging of cardiac excitation using convex relaxation,”** In *IEEE Trans Med Imaging*, Vol. 33, No. 4, pp. 902--912. 2014.

DOI: 10.1109/TMI.2014.2297952

PubMed ID: 24710159

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[Ere2014b] B. Erem, J. Coll-Font, R.M. Orellana, P. Stovicek, D.H. Brooks.
**“Using transmural regularization and dynamic modeling for noninvasive cardiac potential imaging of endocardial pacing with imprecise thoracic geometry,”** In *IEEE Trans Med Imaging*, Vol. 33, No. 3, pp. 726--738. 2014.

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[Fog2014a] T. Fogal, F. Proch, A. Schiewe, O. Hasemann, A. Kempf, J. Krüger.
**“Freeprocessing: Transparent in situ visualization via data interception,”** In *Proceedings of the 14th Eurographics Conference on Parallel Graphics and Visualization*, EGPGV, Eurographics Association, 2014.

[Gur2014a] Y. Gur, C.R. Johnson.
**“Generalized HARDI Invariants by Method of Tensor Contraction,”** In *Proceedings of the 2014 IEEE International Symposium on Biomedical Imaging (ISBI)*, pp. 718--721. April, 2014.

[Han2014a] C.D. Hansen, M. Chen, C.R. Johnson, A.E. Kaufman, H. Hagen (Eds.).
**“Scientific Visualization: Uncertainty, Multifield, Biomedical, and Scalable Visualization,”** Mathematics and Visualization, Springer, 2014.

ISBN: 978-1-4471-6496-8

[Kur2014a] S. Kurugol, K. Kose, B. Park, J.G. Dy, D.H. Brooks, M. Rajadhyaksha.
**“Automated Delineation of Dermal-Epidermal Junction In Reflectance Confocal Microscopy Image Stacks Of Human Skin,”** In *Journal of Investigative Dermatology*, September, 2014.

DOI: 10.1038/jid.2014.379

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[Mcg2014a] C. McGann, N. Akoum, A. Patel, E. Kholmovski, P. Revelo, K. Damal, B. Wilson, J. Cates, A. Harrison, R. Ranjan, N.S. Burgon, T. Greene, D. Kim, E.V. Dibella, D. Parker, R.S. MacLeod, N.F. Marrouche.
**“Atrial fibrillation ablation outcome is predicted by left atrial remodeling on MRI,”** In *Circ Arrhythm Electrophysiol*, Vol. 7, No. 1, pp. 23--30. 2014.

DOI: 10.1161/CIRCEP.113.000689

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[Mil2014a] M. Milanič, V. Jazbinšek, R.S. MacLeod, D.H. Brooks, R. Hren.
**“Assessment of regularization techniques for electrocardiographic imaging,”** In *Journal of electrocardiology*, Vol. 47, No. 1, pp. 20--28. 2014.

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[Par2014a] B.R. Parmar, T.R. Jarrett, N.S. Burgon, E.G. Kholmovski, N.W. Akoum, N. Hu, R.S. Macleod, N.F. Marrouche, R. Ranjan.
**“Comparison of Left Atrial Area Marked Ablated in Electroanatomical Maps with Scar in MRI,”** In *Journal of Cardiovascular Electrophysiology*, 2014.

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[Sic2014a] R. Sicat, J. Krüger, T. Möller, M. Hadwiger.
**“Sparse PDF Volumes for Consistent Multi-Resolution Volume Rendering,”** In *IEEE Transactions on Visualization and Computer Graphics (TVCG)*, Vol. PP, No. 99, pp. 1--1. 2014.

ISBN: 1077-2626

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[Sou2014a] J. Sourati, D. Erdogmus, J.G. Dy, D.H. Brooks.
**“Accelerated learning-based interactive image segmentation using pairwise constraints,”** In *IEEE Transactions on Medical Image Processing*, Vol. 23, No. 7, pp. 3057-3070. July, 2014.

DOI: 10.1109/TIP.2014.2325783

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[Bur2013a] B. Burton, B. Erem, K. Potter, P. Rosen, C.R. Johnson, D. Brooks, R.S. Macleod.
**“Uncertainty Visualization in Forward and Inverse Cardiac Models,”** In *Computing in Cardiology CinC*, pp. 57--60. 2013.

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[But2013a] C. Butson, G. Tamm, S. Jain, T. Fogal, J. Krüger.
**“Evaluation of Interactive Visualization on Mobile Computing Platforms for Selection of Deep Brain Stimulation Parameters,”** In *IEEE Transactions on Visualization and Computer Graphics*, Vol. 19, No. 1, pp. 108--117. January, 2013.

DOI: 10.1109/TVCG.2012.92

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[Col2013a] J. Coll-Font, B. Erem, A. Karma, D.H. Brooks.
**“An inverse spectral method to localize discordant alternans regions on the heart from body surface measurements,”** In *Functional Imaging and Modeling of the Heart*, pp. 241--248. 2013.

DOI: 10.1007/978-3-642-38899-6_29

[Dad2013a] A. Daducci, E.J. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y.-C Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P.R. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, J.-P. Thiran.
**“Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI,”** In *IEEE Transactions on Medical Imaging*, Vol. 33, No. 2, pp. 384--399. 2013.

ISSN: 0278-0062

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[Dat2013a] M. Datar, I. Lyu, S. Kim, J. Cates, M.A. Styner, R.T. Whitaker.
**“Geodesic distances to landmarks for dense correspondence on ensembles of complex shapes,”** In *Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011)*, Vol. 16(Pt. 2), pp. 19--26. 2013.

PubMed ID: 24579119

[Dos2013a] D.J. Dosdall, R. Ranjan, K. Higuchi, E. Kholmovski, N. Angel, L. Li, R.S. Macleod, L. Norlund, A. Olsen, C.J. Davies, N.F. Marrouche.
**“Chronic atrial fibrillation causes left ventricular dysfunction in dogs but not goats: experience with dogs, goats, and pigs,”** In *American Journal of Physiology: Heart and Circulatory Physiology*, Vol. 305, No. 5, pp. H725--H731. September, 2013.

DOI: 10.1152/ajpheart.00440.2013

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[Ere2013a] B. Erem, J. Coll-Font, R.M. Orellana, P. Stovicek, D.H. Brooks, R.S. MacLeod.
**“Noninvasive reconstruction of potentials on endocardial surface from body surface potentials and CT imaging of partial torso,”** In *Journal of Electrocardiology*, Vol. 46, No. 4, pp. e28. 2013.

DOI: 10.1016/j.jelectrocard.2013.05.104

[Ere2013b] B. Erem, R.M. Orellana, P. Stovicek, D.H. Brooks, R.S. MacLeod.
**“Improved averaging of multi-lead ECGs and electrograms,”** In *Journal of Electrocardiology*, Vol. 46, No. 4, Elsevier, pp. e28. July, 2013.

DOI: 10.1016/j.jelectrocard.2013.05.103

[Fog2013a] T. Fogal, A. Schiewe, J. Krüger.
**“An Analysis of Scalable GPU-Based Ray-Guided Volume Rendering,”** In *2013 IEEE Symposium on Large Data Analysis and Visualization (LDAV)*, 2013.

[Gar2013a] G. Gardner, A. Morris, K. Higuchi, R.S. MacLeod, J. Cates.
**“A Point-Correspondence Approach to Describing the Distribution of Image Features on Anatomical Surfaces, with Application to Atrial Fibrillation,”** In *Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI)*, pp. 226--229. 2013.

DOI: 10.1109/ISBI.2013.6556453

[Gru2013a] J. Grüninger, J. Krüger.
**“The impact of display bezels on stereoscopic vision for tiled displays,”** In *Proceedings of the 19th ACM Symposium on Virtual Reality Software and Technology (VRST)*, pp. 241--250. 2013.

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[Ham2013a] D.K. Hammond, Y. Gur, C.R. Johnson.
**“Graph Diffusion Distance: A Difference Measure for Weighted Graphs Based on the Graph Laplacian Exponential Kernel,”** In *Proceedings of the IEEE global conference on information and signal processing (GlobalSIP'13)*, Austin, Texas, pp. 419--422. 2013.

DOI: 10.1109/GlobalSIP.2013.6736904

[Hao2013a] X. Hao, P.T. Fletcher.
**“Joint Fractional Segmentation and Multi-Tensor Estimation in Diffusion MRI,”** In *Proceedings of the International Conference on Information Processing in Medical Imaging (IPMI)*, Lecture Notes in Computer Science (LNCS), pp. (accepted). 2013.

[Har2013a] M.D. Harris, S.P. Reese, C.L. Peters, J.A. Weiss, A.E. Anderson.
**“Three-dimensional Quantification of Femoral Head Shape in Controls and Patients with Cam-type Femoroacetabular Impingement,”** In *Annals of Biomedical Engineering*, Vol. 41, No. 6, pp. 1162--1171. 2013.

DOI: 10.1007/s10439-013-0762-1

[Har2013b] M.D. Harris, M. Datar, R.T. Whitaker, E.R. Jurrus, C.L. Peters, A.E. Anderson.
**“Statistical Shape Modeling of Cam Femoroacetabular Impingement,”** In *Journal of Orthopaedic Research*, Vol. 31, No. 10, pp. 1620--1626. 2013.

DOI: 10.1002/jor.22389

[Her2013a] H. Hernandez, J. Knezevic, T. Fogal, T. Sherman, T. Jevremovic.
**“Visual numerical steering in 3D AGENT code system for advanced nuclear reactor modeling and design,”** In *Annals of Nuclear Energy*, Vol. 55, pp. 248--257. 2013.

[Hig2013a] K. Higuchi, M. Akkaya, M. Koopmann, J.J. Blauer, N.S. Burgon, K. Damal, R. Ranjan, E. Kholmovski, R.S. Macleod, N.F. Marrouche..
**“The Effect of Fat Pad Modification during Ablation of Atrial Fibrillation: Late Gadolinium Enhancement MRI Analysis,”** In *Pacing and Clinical Electrophysiology (PACE)*, Vol. 36, No. 4, pp. 467--476. April, 2013.

DOI: 10.1111/pace.12084

PubMed ID: 23356963

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[Jia2013a] F. Jiao, J.M. Phillips, Y. Gur, C.R. Johnson.
**“Uncertainty Visualization in HARDI based on Ensembles of ODFs,”** In *Proceedings of 2013 IEEE Pacific Visualization Symposium*, pp. 193--200. 2013.

PubMed ID: 24466504

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[Joh2013a] C.R. Johnson, A. Pang (Eds.).
**“International Journal for Uncertainty Quantification,”** Subtitled **“Special Issue on Working with Uncertainty: Representation, Quantification, Propagation, Visualization, and Communication of Uncertainty,”** In *Int. J. Uncertainty Quantification*, Vol. 3, No. 2, Begell House, Inc., pp. vii--viii. 2013.

ISSN: 2152-5080

DOI: 10.1615/Int.J.UncertaintyQuantification.v3.i2

[Joh2013b] C.R. Johnson, A. Pang (Eds.).
**“International Journal for Uncertainty Quantification,”** Subtitled **“Special Issue on Working with Uncertainty: Representation, Quantification, Propagation, Visualization, and Communication of Uncertainty,”** In *Int. J. Uncertainty Quantification*, Vol. 3, No. 3, Begell House, Inc., 2013.

ISSN: 2152-5080

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[Jon2013b] C. Jones, M. Seyedhosseini, M. Ellisman, T. Tasdizen.
**“Neuron Segmentation in Electron Microscopy Images Using Partial Differential Equations,”** In *Proceedings of 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI)*, pp. 1457--1460. April, 2013.

DOI: 10.1109/ISBI.2013.6556809

[Jon2013c] K.B. Jones, M. Datar, S. Ravichandran, H. Jin, E. Jurrus, R.T. Whitaker, M.R. Capecchi.
**“Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas,”** In *Journal of Orthopaedic Research*, Vol. 31, No. 4, pp. 651--657. 2013.

DOI: 10.1002/jor.22280

PubMed ID: 23192691

PubMed Central ID: PMC3683979

[Mcd2013a] K.S. McDowell, F. Vadakkumpadan, R. Blake, J. Blauer, G.t Plank, R.S. MacLeod, N.A. Trayanova.
**“Mechanistic Inquiry into the Role of Tissue Remodeling in Fibrotic Lesions in Human Atrial Fibrillation,”** In *Biophysical Journal*, Vol. 104, pp. 2764--2773. 2013.

DOI: 10.1016/j.bpj.2013.05.025

PubMed ID: 23790385

PubMed Central ID: PMC3686346

[Mcg2013a] C. McGann, N. Akoum, A. Patel, E. Kholmovski, P. Revelo, K. Damal, B. Wilson, J. Cates, A. Harrison, R. Ranjan, N.S. Burgon, T. Greene, D. Kim, E.V.R. DiBella, D. Parker, R.S. MacLeod, N.F. Marrouche.
**“Atrial Fibrillation Ablation Outcome is Predicted by Left Atrial Remodeling on MRI,”** In *Circulation: Arrhythmia and Electrophysiology*, Note: *Published online before print.*, December, 2013.

DOI: 10.1161/CIRCEP.113.000689

[Ore2013a] R.M. Orellana, B. Erem, D.H. Brooks.
**“Time invariant multi electrode averaging for biomedical signals,”** In *Proceedings of the 2013 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)*, pp. 1242--1246. 2013.

ISSN: 1520-6149

DOI: 10.1109/ICASSP.2013.6637849

[Sou2013a] J. Sourati, D.H. Brooks, J.G. Dy, E. Erdogmus.
**“Constrained Spectral Clustering for Image Segmentation,”** In *IEEE International Workshop on Machine Learning for Signal Processing*, pp. 1--6. 2013.

DOI: 10.1109/MLSP

[Sou2013b] J. Sourati, K. Kose, M. Rajadhyaksha, J.G. Dy, D. Erdogmus, D.H. Brooks.
**“Automated localization of wrinkles and the dermo-epidermal junction in obliquely oriented reflectance confocal microscopic images of human skin,”** In *Proc. SPIE 8565, Photonic Therapeutics and Diagnostics IX*, Vol. 8565, 2013.

DOI: 10.1117/12.2006489

[Ven2013a] G. Veni, Z. Fu, S.P. Awate, R.T. Whitaker.
**“Proper Ordered Meshing of Complex Shapes and Optimal Graph Cuts Applied to Atrial-Wall Segmentation from DE-MRI,”** In *Proceedings of the 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI)*, pp. 1296--1299. 2013.

DOI: 10.1109/ISBI.2013.6556769

[Ven2013b] G. Veni, S. Awate, Z. Fu, R.T. Whittaker.
**“Bayesian Segmentation of Atrium Wall using Globally-Optimal Graph Cuts on 3D Meshes,”** In *Proceedings of the International Conference on Information Processing in Medical Imaging (IPMI)*, Lecture Notes in Computer Science (LNCS), Vol. 23, pp. 656--677. 2013.

PubMed ID: 24684007

[Wan2013b] D. Wang, R.M. Kirby, R.S. MacLeod, C.R. Johnson.
**“Inverse Electrocardiographic Source Localization of Ischemia: An Optimization Framework and Finite Element Solution,”** In *Journal of Computational Physics*, Vol. 250, Academic Press, pp. 403--424. 2013.

ISSN: 0021-9991

DOI: 10.1016/j.jcp.2013.05.027

[Wan2013f] Y. Wan.
**“Fluorender, An Interactive Tool for Confocal Microscopy Data Visualization and Analysis,”** Note: *Ph.D. Thesis*, *School of Computing, University of Utah*, June, 2013.

[Zhu2013a] X. Zhu, Y. Gur, W. Wang, P.T. Fletcher.
**“Model Selection and Estimation of Multi-Compartment Models in Diffusion MRI with a Rician Noise Model,”** In *Proceedings of the International Conference on Information Processing in Medical Imaging (IPMI)*, Lecture Notes in Computer Science (LNCS), Vol. 23, pp. 644--655. 2013.

PubMed ID: 24684006

[Ako2012a] N.W. Akoum, C.J. McGann, G. Vergara, T. Badger, R. Ranjan, C. Mahnkopf, E.G. Kholmovski, R.S. Macleod, N.F. Marrouche.
**“Atrial Fibrosis Quantified Using Late Gadolinium Enhancement MRI is AssociatedWith Sinus Node Dysfunction Requiring Pacemaker Implant,”** In *Journal of Cardiovascular Electrophysiology*, Vol. 23, No. 1, pp. 44--50. 2012.

DOI: 10.1111/j.1540-8167.2011.02140.x

[Awa2012a] S.P. Awate, P. Zhu, R.T. Whitaker.
**“How Many Templates Does It Take for a Good Segmentation?: Error Analysis in Multiatlas Segmentation as a Function of Database Size,”** In *Int. Workshop Multimodal Brain Image Analysis (MBIA) at Int. Conf. MICCAI*, Lecture Notes in Computer Science (LNCS), Vol. 2, Note: *Recieved Best Paper Award*, pp. 103--114. 2012.

PubMed ID: 24501720

PubMed Central ID: PMC3910563

[Bro2012c] J.R. Bronson, J.A. Levine, R.T. Whitaker.
**“Lattice Cleaving: Conforming Tetrahedral Meshes of Multimaterial Domains with Bounded Quality,”** In *Proceedings of the 21st International Meshing Roundtable*, pp. 191--209. 2012.

[Bro2012d] J.R. Bronson, J.A. Levine, R.T. Whitaker.
**“Particle Systems for Adaptive, Isotropic Meshing of CAD Models,”** In *Engineering with Computers*, Vol. 28, No. 4, pp. 331--344. 2012.

PubMed ID: 23162181

PubMed Central ID: PMC3499137

[But2012a] C. Butson, G. Tamm, S. Jain, T. Fogal, J. Krüger.
**“Evaluation of Interactive Visualization on Mobile Computing Platforms for Selection of Deep Brain Stimulation Parameters,”** In *IEEE Transactions on Visualization and Computer Graphics*, pp. (accepted). 2012.

ISSN: 1077-2626

DOI: 10.1109/TVCG.2012.92

[Cho2012a] A.N.M. Imroz Choudhury, Bei Wang, P. Rosen, V. Pascucci.
**“Topological Analysis and Visualization of Cyclical Behavior in Memory Reference Traces,”** In *Proceedings of the IEEE Pacific Visualization Symposium (PacificVis 2012)*, pp. 9--16. 2012.

DOI: 10.1109/PacificVis.2012.6183557

[Dan2012a] M. Dannhauer, D.H. Brooks, D. Tucker, R.S. MacLeod.
**“A pipeline for the simulation of transcranial direct current stimulation for realistic human head models using SCIRun/BioMesh3D,”** In *Proceedings of the 2012 IEEE Int. Conf. Engineering and Biology Society (EMBC)*, pp. 5486--5489. 2012.

DOI: 10.1109/EMBC.2012.6347236

PubMed ID: 23367171

PubMed Central ID: PMC3651514

[Dat2012a] M. Datar, P. Muralidharan, A. Kumar, S. Gouttard, J. Piven, G. Gerig, R.T. Whitaker, P.T. Fletcher.
**“Mixed-Effects Shape Models for Estimating Longitudinal Changes in Anatomy,”** In *Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data*, Lecture Notes in Computer Science, Vol. 7570, Springer Berlin / Heidelberg, pp. 76--87. 2012.

ISBN: 978-3-642-33554-9

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[Ere2012a] B. Erem, P. Stovicek, D.H. Brooks.
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**“Association of left atrial fibrosis detected by delayed-enhancement magnetic resonance imaging and the risk of stroke in patients with atrial fibrillation,”** In *Journal of the American College of Cardiology*, Vol. 57, No. 7, pp. 831--838. 2011.

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**“Establishing Multiscale Models for Simulating Whole Limb Estimates of Electric Fields for Osseointegrated Implants,”** In *IEEE Transactions on Biomedical Engineering*, Vol. 58, No. 10, pp. 2991--2994. 2011.

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**“Measuring Defibrillator Surface Potentials for Simulation Verification,”** In *Proceedings of the IEEE Engineering in Medicine and Biology Society EMBS 33rd Annual International Conference*, pp. 239 - 242. 2011.

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[Kup2010b] S.S. Kuppahally, N. Akoum, T.J. Badger, N.S. Burgon, T. Haslam, E. Kholmovski, R.S. Macleod, C. McGann, N.F. Marrouche.
**“Echocardiographic left atrial reverse remodeling after catheter ablation of atrial fibrillation is predicted by preablation delayed enhancement of left atrium by magnetic resonance imaging,”** In *American Heart Journal*, Vol. 160, No. 5, pp. 877--884. 2010.

DOI: 10.1016/j.ahj.2010.07.003

PubMed ID: 21095275

PubMed Central ID: PMC2995281

[Kur2010a] S. Kurugol, N. Ozay, J.G. Dy, G.C. Sharp, D.H. Brooks.
**“Locally Deformable Shape Model to Improve 3D Level Set based Esophagus Segmentation,”** In *Proceedings of the IAPR International Conference on Pattern Recognition*, pp. 3955--3958. August, 2010.

PubMed ID: 21731883

PubMed Central ID: PMC3127393

[Lev2010a] J.A. Levine, D.J. Swenson, Z. Fu, R.S. MacLeod, R.T. Whitaker.
**“A Comparison of Delaunay Based Meshing Algorithms for Electrophysiological Cardiac Simulations,”** In *Virtual Physiological Human*, pp. 181--183. 2010.

[Mah2010a] C. Mahnkopf, T.J. Badger, N.S. Burgon, M. Daccarett, T.S. Haslam, C.T. Badger, C.J. McGann, N. Akoum, E. Kholmovski, R.S. Macleod, N.F. Marrouche.
**“Evaluation of the left atrial substrate in patients with lone atrial fibrillation using delayed-enhanced MRI: implications for disease progression and response to catheter ablation,”** In *Heart Rhythm*, Vol. 7, No. 10, pp. 1475--1481. 2010.

PubMed ID: 20601148

[Pil2010a] T.A. Pilcher, J.D. Tate, J.G. Stinstra, E.V. Saarel, M.D. Puchalski, and R.S. MacLeod.
**“Partially extracted defibrillator coils and pacing leads alter defibrillation thresholds,”** In *Proceedings of the 15th International Academy of Cardiology World Congress of Cardiology*, 2010.

[Pot2010a] K. Potter, J.M. Kniss, R. Riesenfeld, C.R. Johnson.
**“Visualizing Summary Statistics and Uncertainty,”** In *Computer Graphics Forum*, Vol. 29, No. 3, Wiley-Blackwell, pp. 823--831. Aug, 2010.

[Seg2010a] N.M. Segerson, M. Daccarett, T.J. Badger, A. Shabaan, N. Akoum, E.N. Fish, S. Rao, N.S. Burgon, Y. Adjei-Poku, E. Kholmovski, S. Vijayakumar, E.V. DiBella, R.S. MacLeod, N.F. Marrouche.
**“Magnetic resonance imaging-confirmed ablative debulking of the left atrial posterior wall and septum for treatment of persistent atrial fibrillation: rationale and initial experience,”** In *Journal of Cardiovascular Electrophysiology*, Vol. 21, No. 2, pp. 126--132. 2010.

PubMed ID: 19804549

[Sti2010a] J.G. Stinstra, R.S. MacLeod, C.S. Henriquez.
**“Incorporating Histology into a 3D Microscopic Computer Model of Myocardium to Study Propagation at a Cellular Level,”** In *Annals of Biomedical Engineering (ABME)*, Vol. 38, No. 4, pp. 3399--1414. 2010.

DOI: 10.1007/s10439-009-9883-y

[Swe2010a] D. Swenson, J.A. Levine, Z. Fu, J.D. Tate, R.S. MacLeod.
**“The Effect of Non-Conformal Finite Element Boundaries on Electrical Monodomain and Bidomain Simulations,”** In *Computing in Cardiology*, Vol. 37, IEEE, pp. 97--100. 2010.

ISSN: 0276-6547

[Tat2010b] J.D. Tate, J.G. Stinstra, T.A. Pilcher, R.S. MacLeod.
**“Implantable Cardioverter Defibrillator Predictive Simulation Validation,”** In *Computing in Cardiology*, pp. 853-–856. September, 2010.

[Wan2010a] D.F. Wang, R.M. Kirby, C.R. Johnson.
**“Resolution Strategies for the Finite-Element-Based Solution of the ECG Inverse Problem,”** In *IEEE Transactions on Biomedical Engineering*, Vol. 57, No. 2, pp. 220--237. February, 2010.

[Wan2010c] D.F. Wang, R.M. Kirby, R.S. MacLeod, C.R. Johnson.
**“A New Family of Variational-Form-Based Regularizers for Reconstructing Epicardial Potentials from Body-Surface Mapping,”** In *Computing in Cardiology, 2010*, pp. 93--96. 2010.

[Wol2010a] C.H. Wolters, S. Lew, R.S. MacLeod, M.S. Hämäläinen.
**“Combined EEG/MEG source analysis using calibrated finite element head models,”** In *Proc. of the 44th Annual Meeting, DGBMT*, Note: *to appear, http://conference.vde.com/bmt-2010*, Rostock-Warnemünde, Germany, Oct.5-8, 2010 2010.

[Bad2009a] T.J. Badger, R.S. Oakes, M. Daccarett, N.S. Burgon, N. Akoum, E.N. Fish, J.J. Blauer, S.N. Rao, Y. Adjei-Poku, E.G. Kholmovski, S. Vijayakumar, E.V. Di Bella, R.S. MacLeod, N.F. Marrouche.
**“Temporal Left Atrial Lesion Formation After Ablation of Atrial Fibrillation,”** In *Heart Rhythm*, Vol. 6, No. 2, pp. 161--168. February, 2009.

[Bad2009b] T.J. Badger, Y.A. Adjei-Poku, N.S. Burgon, S. Kalvaitis, A. Shaaban, D.N. Sommers, J.J.E. Blauer, E.N. Fish N. Akoum, T.S. Haslem, E.G. Kholmovski, R.S. MacLeod, D.G. Adler, N.F. Marrouche.
**“Initial Experience of Assessing Esophageal Tissue Injury and Recovery Using Delayed-Enhancement MRI After Atrial Fibrillation Ablation,”** In *Circulation: Arrhythmia and Electrophysiology*, Vol. 2, pp. 620--625. 2009.

[Cal2009a] M. Callahan, M.J. Cole, J.F. Shepherd, J.G. Stinstra, C.R. Johnson.
**“A Meshing Pipeline for Biomedical Models,”** In *Engineering with Computers*, Vol. 25, No. 1, SpringerLink, pp. 115-130. 2009.

DOI: 10.1007/s00366-008-0106-1

[Dat2009a] M. Datar, J. Cates, P.T. Fletcher, S. Gouttard, G. Gerig, R.T. Whitaker.
**“Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging,”** In *Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009*, Lecture Notes in Computer Science LNCS, Vol. 5762, pp. 167--174. 2009.

DOI: 10.1007/978-3-642-04271-3_21

PubMed ID: 20426109

[Fle2009b] P.T. Fletcher, J. Moeller, J.M. Phillips, S. Venkatasubramanian.
**“Computing Hulls In Positive Definite Space,”** In *In Proceedings of the 19th Fall Workshop on Computational Geometry*, November, 2009.

[Fog2009b] T. Fogal, J. Krüger.
**“Size Matters - Revealing Small Scale Structures in Large Datasets,”** In *Proceedings of the World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany*, IFMBE Proceedings, Vol. 25/13, Springer Berlin Heidelberg, pp. 41--44. 2009.

[Han2009a] C.D. Hansen, C.R. Johnson, V. Pascucci, C.T. Silva.
**“Visualization for Data-Intensive Science,”** In *The Fourth Paradigm: Data-Intensive Science*, Edited by S. Tansley and T. Hey and K. Tolle, Microsoft Research, pp. 153--164. 2009.

[Isa2009a] B.M. Isaacson, J.G. Stinstra, R.S. MacLeod, J.B. Webster, J.P. Beck, R.D. Bloebaum.
**“Bioelectric Analyses of an Osseointegrated Intelligent Implant Design System for Amputees,”** In *JoVE*, Vol. 29, 2009.

[Kam2009a] M. Kamali, L.J. Day, D.H. Brooks, X. Zhou, D.M. O'Malley.
**“Automated identification of neurons in 3D confocal datasets from zebrafish brainstem,”** In *Journal of Microscopy*, Vol. 233, No. 1, pp. 114--131. January, 2009.

DOI: 10.1111/j.1365-2818.2008.03102.x

PubMed ID: 19196418

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[Kru2009a] J. Krüger, T. Fogal.
**“Focus and Context - Visualization without the Complexity,”** In *Proceedings of the World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany*, IFMBE Proceedings, Vol. 25/13, Springer Berlin Heidelberg, pp. 44--48. 2009.

[Lew2009a] S. Lew, C.H. Wolters, T. Dierkes, C. Röer, R.S. MacLeod.
**“Accuracy and run-time comparison for different potential approaches and iterative solvers in finite element method based EEG source analysis,”** In *Applied Numerical Mathematics*, Vol. 59, pp. 1970--1988. 2009.

[Lew2009b] S. Lew, C.H. Wolters, A. Anwander, S. Makeig, R.S. MacLeod.
**“Improved EEG Source Analysis Using Low-Resolution Conductivity Estimation in a Four-Compartment Finite Element Head Model,”** In *Human Brain Mapping*, Vol. 30, pp. 2862--2878. 2009.

[Mac2009a] R.S. MacLeod, J.G. Stinstra, S. Lew, R.T. Whitaker, D.J. Swenson, M.J. Cole, J. Krüger, D.H. Brooks, C.R. Johnson.
**“Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples,”** In *Philosophical Transactions of The Royal Society A, Mathematical, Physical & Engineering Sciences*, Vol. 367, No. 1896, pp. 2293--2310. 2009.

[Mar2009a] H.G. Martinez, S.I. Prajapati, C.A. Estrada, F. Jimenez, M.P. Quinones, I. Wu, A. Bahadur, A. Sanderson, C.R. Johnson, M. Shim, C. Keller, S.S. Ahuja.
**“Microscopic Computed Tomography Based Virtual Histology for Visualization and Morphometry of Atherosclerosis in Diabetic Apolipoprotein E Mutant Mice,”** In *Circulation: Journal of the American Heart Association*, Vol. 120, No. 9, pp. 821--822. 2009.

[Mar2009b] H. Martinez, S. Prajapati, C. Estrada, F. Jimenez, I. Wu, A. Bahadur, A. Sanderson, C.R. Johnson, M. Shim, C. Keller, S. Ahuja.
**“Microscopic Computed Tomography–Based Virtual Histology for Visualization and Morphometry of Atherosclerosis in Diabetic Apolipoprotein E Mutant Mice,”** In *Circulation*, Vol. 120, No. 821--822, 2009.

[Mil2009a] M. Milanic, V. Jazbinsek, D.F. Wang, J. Sinstra, R.S. Macleod, D.H. Brooks, R. Hren.
**“Evaluation of Approaches of Solving Electrocardiographic Imaging Problem,”** In *Proceeding of Computers in Cardiology 2010*, Park City, Utah, September, 2009.

[Oak2009a] R.S. Oakes, T.J. Badger, E.G. Kholmovski, N. Akoum, N.S. Burgon, E.N. Fish, J.J. Blauer, S.N. Rao, E.V. DiBella, N.M. Segerson, M. Daccarett, J. Windfelder, C.J. McGann, D.L. Parker, R.S. MacLeod, N.F. Marrouche.
**“Detection and quantification of left atrial structural remodeling with delayed-enhancement magnetic resonance imaging in patients with atrial fibrillation,”** In *Circulation*, Vol. 119, No. 13, pp. 1758--1767. 2009.

[Ogu2009a] I. Oguz, M. Niethammer, J. Cates, R.T. Whitaker, P.T. Fletcher, C. Vachet, M. Styner.
**“Cortical Correspondence with Probabilistic Fiber Connectivity,”** In *Information Processing in Medical Imaging (IPMI)*, Lecture Notes in Computer Science (LCNS), Vol. 5636, pp. 651--663. 2009.

DOI: 10.1007/978-3-642-02498-6_54

[Par2009a] S.G. Parker, K. Damevski, A. Khan, A. Swaminathan, C.R. Johnson.
**“The SCIJump Framework for Parallel and Distributed Scientific Computing,”** In *Advanced Computational Infrastructures for Parallel and Distributed Adaptive Applications*, Edited by Manish Parashar and Xiaolin Li and Sumir Chandra, Wiley-Blackwell, pp. 149--170. 2009.

DOI: 10.1002/9780470558027.ch9

[San2009c] A.R. Sanderson, M.D. Meyer, R.M. Kirby, C.R. Johnson.
**“A Framework for Exploring Numerical Solutions of Advection Reaction Diffusion Equations using a GPU Based Approach,”** In *Journal of Computing and Visualization in Science*, Vol. 12, pp. 155--170. 2009.

DOI: 10.1007/s00791-008-0086-0

[Seg2009a] N.M. Segerson, M. Daccarett, T.J. Badger, A. Shabaan, N. Akoum, E.N. Fish, S. Rao, N.S. Burgon, Y. Adjei-Poku, E.G. Kholmovski, S. Vijayakumar, E.V.R. Dibella, R.S. Macleod, N.F. Marrouche.
**“Magnetic Resonance Imaging-Confirmed Ablative Debulking of the Left Atrial Posterior Wall and Septum for Treatment of Persistent Atrial Fibrillation: Rationale and Initial Experience,”** In *Journal of Cardiovascular Electrophysiology*, Vol. 21, No. 2, pp. 126--132. 2009.

[She2009a] J.F. Shepherd, C.R. Johnson.
**“Hexahedral Mesh Generation for Biomedical Models in SCIRun,”** In *Engineering with Computers*, Vol. 25, No. 1, pp. 97--114. 2009.

[Tao2009a] R. Tao, P.T. Fletcher, R.T. Whitaker.
**“A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI,”** In *Lecture Notes in Computer Science*, Springer, pp. 664--675. 2009.

DOI: 10.1007/978-3-642-02498-6_55

PubMed ID: 19694302

[Tat2009a] J.D. Tate, J.G. Stinstra, T. Pilcher, and R.S. MacLeod.
**“Measuring Implantable Cardioverter Defibrillators (ICDs) During Implantation Surgery: Verification of a Simulation,”** In *Computers in Cardiology*, pp. 473--476. 2009.

ISSN: 0276-6547

[Wan2009c] D.F. Wang, R.M. Kirby, C.R. Johnson.
**“Finite Element Discretization Strategies for the Inverse Electrocardiographic (ECG) Problem,”** In *Proceedings of the 11th World Congress on Medical Physics and Biomedical Engineering*, Munich, Germany, Vol. 25/2, pp. 729-732. September, 2009.

[Wan2009d] D.F. Wang, R.M. Kirby, C.R. Johnson.
**“Finite Element Refinements for Inverse Electrocardiography: Hybrid-Shaped Elements, High-Order Element Truncation and Variational Gradient Operator,”** In *Proceeding of Computers in Cardiology 2009*, Park City, September, 2009.

[Cat2008a] J. Cates, P.T. Fletcher, Z. Warnock, R.T. Whitaker.
**“A Shape Analysis Framework for Small Animal Phenotyping with Application to Mice with a Targeted Disruption of Hoxd11,”** In *Proceedings of the 5th IEEE International Symposium on Biomedical Imaging (ISBI '08)*, pp. 512--516. 2008.

DOI: 10.1109/ISBI.2008.4541045

[Cat2008b] J. Cates, P.T. Fletcher, M. Styner, H. Hazlett, R.T. Whitaker.
**“Particle-Based Shape Analysis of Multi-Object Complexes,”** In *Proceedings of the 11th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI '08)*, Lecture Notes In Computer Science (LCNS), pp. 477--485. 2008.

ISBN: 978-3-540-85987-1

[Gen2008a] S.E. Geneser, R.M. Kirby, R.S. MacLeod.
**“Application of Stochastic Finite Element Methods to Study the Sensitivity of ECG Forward Modeling to Organ Conductivity,”** In *IEEE Transations on Biomedical Engineering*, Vol. 55, No. 1, pp. 31--40. January, 2008.

[Joh2008a] C.R. Johnson, X. Tricoche.
**“Biomedical Visualization,”** In *Advances in Biomedical Engineering*, Ch. 6, Edited by Pascal Verdonck, Elsvier Science, pp. 209--272. 2008.

[Jol2008a] M. Jolley, J.G. Stinstra, S. Pieper, R.S. MacLeod, D.H. Brooks, F. Cecchin, J.K. Triedman.
**“A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults,”** In *Heart Rhythm*, Vol. 5, No. 4, pp. 565--572. April, 2008.

PubMed ID: 18362024

[Kru2008b] J. Krüger, K. Potter, R.S. MacLeod, C.R. Johnson.
**“Unified Volume Format: A General System For Efficient Handling Of Large Volumetric Datasets,”** In *Proceedings of IADIS Computer Graphics and Visualization 2008 (CGV 2008)*, pp. 19--26. 2008.

PubMed ID: 20953270

[Led2008a] C. Ledergerber, G. Guennebaud, M.D. Meyer, M. Bacher, H. Pfister.
**“Volume MLS Ray Casting,”** In *IEEE Transactions on Visualization and Computer Graphics (Proceedings of Visualization 2008)*, Vol. 14, No. 6, pp. 1539--1546. 2008.

[Lew2008a] S. Lew, C.H. Wolters, A. Anwander, S. Makeig, R.S. Macleod.
**“Improved EEG Source Analysis Using Low-Resolution Conductivity Estimation in a Four-Compartment Finite Element Head Model,”** In *Human Brain Mapping*, Vol. 31, December, 2008.

[Li2008a] G.-S. Li, X. Tricoche, D. Weiskopf, C.D. Hansen.
**“Flow Charts: Visualization of Vector Fields on Arbitrary Surfaces,”** In *IEEE Transactions on Visualization and Computer Graphics*, Vol. 14, No. 5, pp. 1--14. September/October, 2008.

[Liv2008a] Y. Livnat, S.G. Parker, C.R. Johnson.
**“Fast Isosurface Extraction Methods for Large Image Data Sets,”** In *Handbook of Medical Image Processing and Analysis*, 2nd edition, Ch. 47, Note: *(to appear)*, Edited by Isaac N. Bankman, Elsevier, pp. 801--816. 2008.

[Mcg2008a] C.J. McGann, E.G. Kholmovski, R.S. Oakes, J.J. Blauer, M. Daccarett, N. Segerson, K.J. Airey, N. Akoum, E. Fish, T.J. Badger, E.V. DiBella, D.L. Parker, R.S. MacLeod, N.F. Marrouche.
**“New Magnetic Resonance Imaging-Based Method for Defining the Extent of Left Atrial Wall Injury After the Ablation of Atrial Fibrillation,”** In *Journal of the American College of Cardiology*, Vol. 52, No. 15, pp. 1263--1271. Oct 7, 2008.

[Mey2008a] M.D. Meyer, R.T. Whitaker, R.M. Kirby, C. Ledergerber, H. Pﬁster.
**“Particle-based Sampling and Meshing of Surfaces in Multimaterial Volumes,”** In *IEEE Transactions on Visualization and Computer Graphics*, Vol. 14, No. 6, pp. 1539--1546. 2008.

[Ogu2008a] I. Oguz, J. Cates, P.T. Fletcher, R.T. Whitaker, D. Cool, S. Aylward, M. Styner.
**“Cortical Correspondence using Entropy-Based Particle Systems and Local Features,”** In *5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008. (ISBI 2008)*, pp. 1637--1640. 2008.

[Piz2008g] S. Pizer, M. Styner, T. Terriberry, R. Broadhurst, S. Joshi, E. Chaney, P.T. Fletcher.
**“Statistical Applications with Deformable M-Reps,”** In *Computational Imaging and Vision*, Springer, pp. 269--308. 2008.

DOI: 10.1007/978-1-4020-8658-8_9

[Pot2008a] K. Potter, J. Krüger, C.R. Johnson.
**“Towards the Visualization of Multi-Dimentional Stochastic Distribution Data,”** In *Proceedings of The International Conference on Computer Graphics and Visualization (IADIS) 2008*, pp. 191--196. 2008.

[She2008a] J.F. Shepherd, C.R. Johnson.
**“Hexahedral Mesh Generation Constraints,”** In *Journal of Engineering with Computers*, Vol. 24, No. 3, pp. 195--213. 2008.

[Shv2008a] A.G. Shvedko, M.D. Warren, S. Shome, J.G. Stinstra, A.V. Zaitsev.
**“Influence of the Skeletal Muscle Activity on Time and Frequency Domain Properties of the Body Surface ECG During Evolving Ventricular Fibrillation in the Pig,”** In *Resuscitation*, Vol. 78, No. 2, pp. 215--223. May 24, 2008.

DOI: 10.1016/j.resuscitation.2008.03.010

[Sti2008a] J.G. Stinstra, M.A. Jolley, J.D. Tate, D.H. Brooks, J.K. Triedman, R.S. MacLeod.
**“The Role of Volume Conductivities in Simulation of Implantable Defibrillators,”** In *Computers in Cardiology*, Bologna, Italy, 2008.

[Sti2008b] J.G. Stinstra, M. Jolley, M. Callahan, D.M. Weinstein, M. Cole, D.H. Brooks, J. Triedman, R.S. MacLeod.
**“Evaluation of Different Meshing Algorithms in the Computation of Defibrillation Thresholds in Children,”** In *Proceedings of the 29th Annual International Conference of the IEEE EMBS*, pp. 1422-1425. 2008.

ISBN: 978-1-4244-0787-3

[Sut2008a] D.R. Sutherland, Q. Ni, R.S. MacLeod, R.L. Lux, B.B. Punske.
**“Experimental Measures of Ventricular Activation and Synchrony,”** In *Pacing and Clinical Electrophysiology*, Vol. 31, No. 12, pp. 1560--1570. December, 2008.

[Tac2008a] B. Taccardi, B.B. Punske, E. Macchi, R.S. MacLeod, P.R. Ershler.
**“Epicardial and Intramural Excitation During Ventricular Pacing: Effect of Myocardial Structure,”** In *The American Journal of Physiology - Heart and Circulatory Physiology*, Vol. 294, No. 4, pp. H1753--1766. April, 2008.

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[Tri2008a] X. Tricoche, R.S. MacLeod, C.R. Johnson.
**“Visual Analysis of Bioelectric Fields,”** In *Visualization in Medicine and Life Sciences*, Mathematics and Visualization, Springer-Verlag, pp. 205--220. 2008.

[Tri2008b] J.K. Triedman, M. Jolley, J. Stinstra, D.H. Brooks, R.S. MacLeod.
**“Predictive Modeling of Defibrillation Using Hexahedral and Tetrahedral Finite Element Models: Recent Advances,”** In *Journal of Electrocardiology*, Vol. 41, pp. 483--486. 2008.

[Vas2008a] S.X. Vasquez, M.S. Hansen, A.N. Bahadur, M.F. Hockin, G.L. Kindlmann, L. Nevell, I.Q. Wu, D.J. Grunwald, D.M. Weinstein, G.M. Jones, C.R. Johnson, J.L. Vandeberg, M.R. Capecchi, C. Keller.
**“Optimization of Volumetric Computed Tomography for Skeletal Analysis of Model Genetic Organisms,”** In *The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology*, Vol. 291, pp. 475--487. 2008.

PubMed ID: 18286615

[Adl2007a] G. Adluru, S.P. Awate, T. Tasdizen, R.T. Whitaker, E.V.R. DiBella.
**“Temporally Constrained Reconstruction of Dynamic Cardiac Perfusion MRI,”** In *Magnetic Resonance in Medicine*, Vol. 57, pp. 1027--1036. 2007.

[Adl2007b] G. Adluru, R.T. Whitaker, E.V.R. DiBella.
**“Spatio-Temporal Constrained Reconstruction of Sparse Dynamic Contrast Enhanced Radial MRI Data,”** In *Proceedings of the IEEE International Symposium on Biomedical Imaging*, pp. 109--112. 2007.

[Adl2007c] G. Adluru, E. Hsu, E.V.R. DiBella.
**“Constrained Reconstruction of Sparse Cardiac MR DTI Data,”** In *Proceedings of FIMH 2007*, LNCS, No. 4466, pp. 91--99. 2007.

[Bro2007a] D.H. Brooks, A. Keely, A. Ghodrati, G. Tadmor, R.S. MacLeod.
**“Some Spatio-Temporal Approaches to Inverse Electrocardiography,”** In *Proc. Asilomar Conf. on Signals, Systems, and Computers*, Pacific Grove, CA, November, 2007.

DOI: 10.1109/ACSSC.2007.4487316

[Cal2007a] M. Callahan, M.J. Cole, J.F. Shepherd, J.G. Stinstra, C.R. Johnson.
**“BioMesh3D: A Meshing Pipeline for Biomedical Models,”** SCI Institute Technical Report, No. UUSCI-2007-009, *University of Utah*, 2007.

[Cal2007b] M. Callahan, M.J. Cole, J.F. Shepherd, J.G. Stinstra, C.R. Johnson.
**“A Meshing Pipeline for Biomedical Computing,”** In *Engineering with Computers*, Special Issue on Computational Bioengineering, pp. (in press). 2007.

[Cat2007a] J. Cates, P.T. Fletcher, M. Styner, M. Shenton, R.T. Whitaker.
**“Shape Modeling and Analysis with Entropy-Based Particle Systems,”** In *Proceedings of Information Processing in Medical Imaging (IPMI) 2007*, LNCS 4584, pp. 333--345. 2007.

[Gen2007a] S.E. Geneser, R.M. Kirby, D. Xiu, F.B. Sachse.
**“Stochastic Markovian Modeling of Electrophysiology of Ion Channels: Reconstruction of Standard Deviations in Macroscopic Currents,”** In *Journal of Theoretical Biology*, Vol. 245, No. 4, pp. 627--637. 2007.

DOI: 10.1016/j.jtbi.2006.10.016

[Gho2007a] A. Ghodrati, D.H. Brooks, R.S. MacLeod.
**“Methods of Solving Reduced Lead Systems for Inverse Electrocardiography,”** In *IEEE Trans Biomed Eng*, Vol. 54, No. 2, pp. 339--343. February, 2007.

PubMed ID: 17278592

[Jeo2007a] W.-K. Jeong, P.T. Fletcher, R. Tao, R.T. Whitaker.
**“Interactive Visualization of Volumetric White Matter Connectivity in DT-MRI Using a Parallel-Hardware Hamilton-Jacobi Solver,”** In *IEEE Transactions on Visualization and Computer Graphics*, Vol. 13, No. 6, pp. 1480--1487. 2007.

PubMed ID: 17968100

[Jol2007a] M. Jolley, J.G. Stinstra, D.M. Weinstein, S. Pieper, R.S.J. Estepar, G. Kindlmann, R.S. MacLeod, D.H. Brooks, J.K. Triedman.
**“Open-Source Environment for Interactive Finite Element Modeling of Optimal ICD Electrode Placement,”** In *Functional Imaging and Modeling of the Heart*, Lecture Notes in Computer Science (LCNS), Vol. 4466/2007, pp. 373--382. 2007.

ISBN: 978-3-540-72906-8

[Kin2007a] G. Kindlmann, D.B. Ennis, R.T. Whitaker, C.-F. Westin.
**“Diffusion Tensor Analysis With Invariant Gradients and Rotation Tangents,”** In *IEEE Transactions on Medical Imaging*, Vol. 26, No. 11, pp. 1483--1499. 2007.

[Lew2007a] S. Lew, C. Wolters, A. Anwander, S. Makeig, R.S. MacLeod.
**“Low Resolution Conductivity Estimation to Improve Source Localization,”** In *New Frontiers in Biomagnetism. Proceedings of the 15th International Conference on Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006.*, International Congress Series, Vol. 1300, pp. 149--152. June, 2007.

[Mal2007a] M. Malik, Y. Birnbaum, R.S. MacLeod, V. Shusterman.
**“Markers of impaired repolarization,”** In *Journal of Electrocardiology*, Vol. 40, No. 1, pp. S54--S57. January, 2007.

[Mey2007b] M.D. Meyer, R.M. Kirby, R.T. Whitaker.
**“Topology, Accuracy, and Quality of Isosurface Meshes Using Dynamic Particles,”** In *IEEE Transactions on Visualization and Computer Graphics*, Vol. 13, No. 6, IEEE, pp. 1704--1711. Nov, 2007.

[She2007c] J.F. Shepherd, C.R. Johnson.
**“Hexahedral Mesh Generation for Biomedical Models in SCIRun,”** SCI Institute Technical Report, No. UUSCI-2007-008, *University of Utah*, 2007.

[Sho2007a] S. Shome, R.L. Lux, B.B. Punske, R.S. MacLeod.
**“Ischemic Preconditioning Protects Against Arrhythmogenesis Through Maintenance of Both Active as well as Passive Electrical Properties in Ischemic Canine Hearts,”** In *Journal of Electrocardiology*, Vol. 40, No. 6 supp, pp. S150--S159. Nov-Dec, 2007.

[Sho2007b] S. Shome, J.G. Stinstra, C Henriquez, R.S. Macleod.
**“Influence of Extracellular Potassium and Reduced Extracellular Space on Conduction Velocity During Acute Ischemia: A Simulation Study,”** In *Journal of Electrocardiology*, Vol. 40, No. 4, pp. S5--S6. 2007.

[Sti2007a] J.G. Stinstra, M. Jolley, M. Callahan, D.M. Weinstein, M. Cole, D.H. Brooks, J. Triedman, R.S. MacLeod.
**“Evaluation of Different Meshing Algorithms in the Computation of Defibrillation Thresholds in Children,”** In *Proceedings of the 29th Annual International Conference of the IEEE EMBS*, pp. 1422--1425. 2007.

[Tri2007a] J.K. Triedman, M. Jolley, R.S. MacLeod, J.G. Stinstra, D.H. Brooks, S. Pieper.
**“A System for Image Based Finite Element Modeling of Novel Defibrillation Strategies,”** In *Life Science Systems and Applications Workshop, 2007. LISA 2007*, pp. 63--66. 2007.

[Tri2007c] J.K. Triedman, M. Jolley, R.S. MacLeod, J. Stinstra, D.H. Brooks, S. Pieper.
**“Finite Element Modeling of Novel Defibrillation Approaches in Children and Adults,”** In *Proc. LISSA Conf.*, Bethesda, MD, November, 2007.

[Vas2007a] S.X. Vasquez, A.N. Bahadur, J.T. Johnson III, D.R. Rodriguez, C. Keller.
**“Severe Runting of a Laboratory Mouse (Mus musculus),”** In *Lab Animal*, Vol. 36, No. 1, pp. 19, 22--23. January, 2007.

[Wol2007b] C.H. Wolters, H. Köstler, C. Möller, J. Härtlein, L. Grasedyck, W. Hackbusch.
**“Numerical Mathematics of the Subtraction Method for the Modeling of a Current Dipole in EEG Source Reconstruction Using Finite Element Head Models,”** In *SIAM J. on Scientific Computing*, Vol. 30, No. 1, pp. 24--45. 2007.

[Wol2007c] C.H. Wolters, H. Köstler, C. Möller, J. Härdtlein, A. Anwander.
**“Numerical Approaches for Dipole Modeling in Finite Element Method Based Source Analysis,”** In *New Frontiers in Biomagnetism. Proceedings of the 15th International Conference on Biomagnetism, Vancouver, BC, Canada, August 21-25, 2006.*, International Congress Series, Vol. 1300, pp. 189--192. June, 2007.

[Yih2007a] B. Yihnaz, R.S. MacLeod, B.B. Punske, B. Taccardi, and D.H. Brooks.
**“Generalized training subset selection for statistical estimation of epicardial activation maps from intravenous catheter measurements,”** In *Compo in BioI. and Med.*, In *Compo in BioI. and Med.*, Vol. 37, No. 3, pp. 328--336. 2007.

[Yil2007a] B. Yilmaz, R.S. MacLeod.
**“Generalized Training Subset Selection for Statistical Estimation of Epicardial Activation Maps from Intravenous Catheter Measurements,”** In *Computers in Biology and Medicine*, Vol. 37, No. 9, pp. 328--336. March, 2007.

[Adl2006a] G. Adluru, E.V.R. DiBella, R.T. Whitaker.
**“Automatic Segmentation of Cardiac Short Axis Slices in Perfusion MRI,”** In *Proceedings of The 2006 IEEE International Symposium on Biomedical Imaging*, pp. 133--136. 2006.

[Adl2006b] G. Adluru, E.V.R. DiBella.
**“Segmentation Based Registration of Myocardium in Cardiac Perfusion Images,”** In *Proceedings of The 14th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM)*, Vol. 14, pp. 1223. 2006.

[Arm2006a] R. Armstrong, G. Kumfert, L.C. McInnes, S.G. Parker, B. Allan, M. Sottile, T. Epperly, T. Dahlgren.
**“The CCA Component Model for High-Performance Scientific Computing,”** In *Concurrency and Computation: Practice & Experience*, Vol. 18, No. 2, John Wiley and Sons Ltd., Chichester, UK pp. 215--229. 2006.

ISSN: 1532-0626

[Awa2006c] S.P. Awate, T. Tasdizen, R.T. Whitaker.
**“Unsupervised Texture Segmentation with Nonparametric Neighborhood Statistics,”** SCI Institute Technical Report, No. UUSCI-2006-011, *University of Utah*, 2006.

[Awa2006d] S.P. Awate, R.T. Whitaker.
**“Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration,”** In *IEEE Trans. Pattern Anal. & Mach. Intel.*, Vol. 28, No. 3, pp. 364--376. March, 2006.

PubMed ID: 16526423

[Bab2006a] S. Babaeizadeh, D.H. Brooks.
**“Imaging Error from Mislocation of Surface Sensors: Sensitivity, Detection, and Estimate Correction, with Application to EIT,”** In *Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing*, Toulouse, France May, 2006.

[Bro2006a] S. Browd, L.J. Healy, G. Dobie, J.T. Johnson III, G.M. Jones, L.F. Rodriguez, D.L. Brockmeyer.
**“Morphometric and Qualitative Analysis of Congenital Occipitocervical Instability in Children: Implications for Down Syndrome Patients,”** In *Journal of Neurosurgery: Pediatrics*, Vol. 105, No. 1 , Journal of Neurosurgery Publishing Group, pp. 50--54. July, 2006.

DOI: 10.3171/ped.2006.105.1.50

[Cat2006b] J. Cates, D. Weinsten, M. Davis.
**“The Center for Integrative Biomedical Computing: Advancing Biomedical Science with Open Source,”** In *Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI) 2006*, 2006.

[Gho2006a] A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod.
**“Wavefront-based Models for Inverse Electrocardiography,”** In *IEEE Trans Biomed. Eng.*, Vol. 53, No. 9, pp. 1821--1831. 2006.

DOI: 10.1109/TBME.2006.878117

[Gho2006b] A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod.
**“Lead Selection for Inverse Electrocardiography,”** In *IEEE Trans Biomed. Eng.*, pp. in press. 2006.

[Gho2006c] A. Ghodrati, A. Keely, G. Tadmor, R.S. MacLeod, D.H. Brooks.
**“A Wavefront-Based Constraint for Potential Surface Solutions in Inverse Electrocardiography,”** In *2006 International Conference of the IEEE Engineering in Medicine and Biology Society*, IEEE, New York, NY, USA August, 2006.

DOI: 10.1109/IEMBS.2006.260373

[Gho2006d] A. Ghodrati, D.H Brooks, G. Tadmor, R.S. MacLeod.
**“A Threshold-Based Method for Inverse Solutions to Reconstruct Complex Obstacles, with Application to the Inverse Problem of Electrocardiography,”** In *SIAM Conference on Imaging Science*, Minneapolis, MN, USA May, 2006.

[Joh2006a] C.R. Johnson, D.M. Weinstein.
**“Biomedical Computing and Visualization,”** In *Proceedings of the Twenty-Ninth Australasian Computer Science Conference (ACSC2006): Conferences in Research and Practice in Information Technology (CRPIT)*, Hobart, Australia, Vol. 48, Edited by Vladimir Estivill-Castro and Gill Dobbie, pp. 3-10. 2006.

[Joh2006c] J.T. Johnson III, M.S. Hansen, I. Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C. Keller.
**“Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping,”** In *PLoS Genetics*, Vol. 2, No. 1, pp. 471--477. April, 2006.

[Joh2006d] C.R. Johnson.
**“Computational Methods and Software for Bioelectric Field Problems,”** In *Biomedical Engineering Handbook, 2nd Edition*, Vol. 1, Ch. 23, Edited by J.D. Bronzino, CRC Press, Boca Raton, pp. 1--23. 2006.

[Joh2006f] J.T. Johnson III, M.S. Hansen, I.Q Wu, L.J. Healy, C.R. Johnson, G.M. Jones, M.R. Capecchi, C.Keller.
**“Virtual Histology of Transgenic Mouse Embryos for High-Throughput Phenotyping,”** In *Proceedings of the Teratology 46th Annual Meeting*, Tucson, AZ, 2006.

[Jol2006a] M. Jolley, J. Triedman, C.-F. Westin, D.M. Weinstein, R.S. MacLeod, D.H. Brooks.
**“Image Based Modeling of Defibrillation in Children,”** In *Proceedings of the 26th Annual International Conference of the IEEE EMBS*, New York, NY, USA August, 2006.

[Jur2006a] E. Jurrus, T. Tasdizen, P. Koshevoy, P.T. Fletcher, M. Hardy, C-B. Chien, W. Denk, R.T. Whitaker.
**“Axon Tracking in Serial Block-Face Scanning Electron Microscopy,”** In *Workshop on Microscopic Image Analysis with Applications in Biology, MICCAI*, October, 2006.

[Kin2006a] G. Kindlmann, X. Tricoche, C.-F. Westin.
**“Anisotropy Creases Delineate White Matter Structure in Diffusion Tensor MRI,”** In *Proceedings of the Ninth International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI'06)*, Copenhagen, Denmark, Springer Lecture Notes in Computer Science 4190, pp. 126--133. October, 2006.

[Kum2006a] G. Kumfert, D.E. Bernholdt, T.G.W. Epperly, J.A. Kohl, L.C. McInnes, S.G. Parker, J. Ray.
**“How the Common Component Architecture Advances Computational Science,”** In *J. Phys.: Conf. Ser.*, Vol. 46, pp. 479--493. 2006.

[Li2006a] G. Li, X. Tricoche, C.D. Hansen.
**“GPUFLIC: Interactive and Accurate Dense Visualization of Unsteady Flows,”** In *Proceedings of Euro Vis 2006*, pp. 29--34. 2006.

[Lor2006a] L. Lorenzo, R.S. MacLeod, R.T. Whitaker, G. Adluru, E.V.R. DiBella.
**“Level Sets and Shape Models for Segmentation of Cardiac Perfusion MRI,”** In *Proceedings of International Society for Optical Engineering (SPIE) Conference on Medical Imaging 2006*, Vol. 6144, pp. 1320--1331. 2006.

[Moo2006a] C.R. Johnson, R. Moorhead, T. Munzner, H. Pfister, P. Rheingans, T. Yoo.
**“NIH/NSF Visualization Research Challenges Report Summary,”** Note: *NIH/NSF*, pp. 66-73. 2006.

[Nag2006a] S. Nagarajan, O. Portniaguine, D. Hwang, C.R. Johnson, K. Sekihara.
**“Controlled Support MEG Imaging,”** In *NeuroImage*, Vol. 15;33, No. 3, pp. 878--885. 2006.

[Par2006b] S.G. Parker, K. Zhang, K. Damevski, C.R. Johnson.
**“Integrating Component-Based Scientific Computing Software,”** In *Parallel Processing for Scientific Computing*, Edited by M.A. Heroux and P. Raghavan and H.D. Simon, SIAM Press, pp. 271--288. 2006.

ISBN: 0-89871-619-5

[Ser2006a] Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod.
**“Improved Performance of Bayesian Solutions for Inverse Electrocardiography Using Multiple Information Sources,”** In *IEEE Trans Biomed. Eng.*, Vol. 53, No. 10, pp. 2024--2034. October, 2006.

[She2006a] J.F. Shepherd.
**“Hexahedral Mesh Generation Constraints,”** SCI Institute Technical Report, No. UUSCI-2006-010, *University of Utah*, 2006.

[Sti2006a] J.G. Stinstra, S.F. Roberts, J.B. Pormann, R.S. MacLeod, C.S. Henriquez.
**“A Model of 3D Propagation in Discrete Cardiac Tissue,”** In *Proceedings of Computers in Cardiology 2006*, Vol. 33, pp. 41. 2006.

[Tri2006a] X. Tricoche, X. Zheng, A. Pang.
**“Visualizing the Topology of Symmetric, Second-Order, Time-varying Two-Dimensional Tensor Fields,”** In *Visualization and Processing of Tensor Fields*, Springer, pp. 225--240. 2006.

[Wol2006a] C.H. Wolters, A. Anwander, X. Tricoche, D.M. Weinstein, M.A. Koch, R.S. MacLeod.
**“Influence of Tissue Conductivity Anisotropy on EEG/MEG Field and Return Current Computation in a Realistic Head Model: A Simulation and Visualization Study Using High-Resolution Finite Element Modeling,”** In *Neuroimage*, Vol. 30, No. 3, pp. 813--826. April, 2006.

[Wol2006b] C.H. Wolters, A. Anwander, G. Berti, U. Hartmann.
**“Geometry-Adapted Hexahedral Meshes Improve Accuracy of Finite Element Method Based EEG Source Analysis,”** In *IEEE Transactions on Biomedical Engineering*, Vol. 54, No. 8, pp. 1446--1453. August, 2006.

[Wol2006c] D. Güllmar, J. Haueisen, M. Eiselt, F. Giessler, L. Flemming, A. Anwander, T. Knösche, C.H. Wolters, M. Dümpelmann, D.S. Tuch, J.R. Reichenbach.
**“Influence of Anisotropic Conductivity on EEG Source Reconstruction: Investigations in a Rabbit Model,”** In *IEEE Trans. Biomed. Eng.*, Vol. 53, No. 9, pp. 1841--1850. 2006.

[Yil2006a] B. Yilmaz, R.S. Macleod.
**“Instance Selection for Estimation of Epicardial Activation Sequence from Venous Catheter Measurements,”** In *Proceedings of the 28th IEEE EMBS Annual International Conference*, pp. 3982--3985. 2006.

[Awa2005b] S.P. Awate, R.T. Whitaker.
**“Higher-Order Image Statistics for Unsupervised, Information-Theoretic, Adaptive, Image Filtering,”** SCI Institute Technical Report, No. UUSCI-2005-004, *University of Utah*, 2005.

[Awa2005c] S.P. Awate, R.T. Whitaker.
**“Nonparametric Neighborhood Statistics for MRI Denoising,”** SCI Institute Technical Report, No. UUSCI-2005-005, *University of Utah*, 2005.

[Awa2005e] S.P. Awate, R.T. Whitaker.
**“Nonparametric Neighborhood Statistics for MRI Denoising,”** In *In Proc. Int. Conf. Information Processing in Medical Imaging (IPMI), 2005. Lecture Notes in Computer Science*, Vol. 3565, pp. 677--688. July, 2005.

[Awa2005f] S.P. Awate, R.T. Whitaker.
**“Higher-Order Image Statistics for Unsupervised, Information-Theoretic, Adaptive, Image Filtering,”** In *Proceedings of the IEEE Int. Conf. Computer Vision and Pattern Recognition (CVPR)*, pp. 44--51. 2005.

[Awa2005g] S.P. Awate, R.T. Whitaker.
**“Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration,”** In *IEEE Trans. Pattern Anal. & Mach. Intel.*, Vol. 28, No. 3, pp. 364--376. 2005.

[Cal2005b] F. Calderero, A. Ghodrati, D.H. Brooks, G. Tadmor, R.S. MacLeod.
**“A Method to Reconstruct Activation Wavefronts Without Isotropy Assumptions Using a Level Sets Approach,”** In *Functional Imaging and Modeling of the Heart: Third International Workshop (FIMH 2005)*, Barcelona, June 2-4, pp. 195. 2005.

[Gen2005a] S.E. Geneser, S. Choe, R.M. Kirby, R.S. MacLeod.
**“Influence of Stochastic Organ Conductivity in 2D ECG Forward Modeling: A Stochastic Finite Element Study,”** In *Proceedings of The Joint Meeting of The 5th International Conference on Bioelectromagnetism and The 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart*, pp. 5528--5531. 2005.

[Gho2005a] A. Ghodrati, D.H. Brooks, G. Tadmor, B.B. Punske, R.S. MacLeod.
**“Wavefront-based Inverse Electrocardiography using an Evolving Curve State Vector and Phenomenological Propagation and Potential Models,”** In *IJBEM*, Vol. 7, No. 2, pp. 210--213. 2005.

[Gul2005a] D. Gullmar, J.R. Reichenbach, A. Anwander, T. Knosche, C.H. Wolters, M. Eiselt, J. Haueisen.
**“Influence of Anisotropic Conductivity of the White Matter Tissue on EEG Source Reconstruction - An FEM Simulation Study,”** In *Int. J. Bioelectromag.*, Vol. 7, No. 1, pp. 108--110. 2005.

[Haw2005a] P. Hawkes, G. Kindlmann, D. Weinstein, G.M. Jones, C. Keller.
**“Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors,”** In *Proceedings of 2005 SMI Conference, 4th Annual Meeting of the Society for Molecular Imaging*, Cologne, Germany, 2005.

[Hop2005a] B. Hopenfeld, J.G. Stinstra, R.S. MacLeod.
**“The Effect of Conductivity on ST-Segment Epicardial Potentials Arising from Subendocardial Ischemia,”** In *Annal. Biomed. Eng.*, Vol. 33, No. 6, pp. 751--763. 2005.

[Kho2005a] E.G. Khölmovski, E.V.R. DiBella, A.A. Samsonov.
**“Accurate Assessment of the Arterial Input Function using MRI with Radial Sampling,”** In *Proceedings of the Society for Cardiovascular Magnetic Resonance (SCMR) 8th Annual Scientific Sessions*, Vol. 7, pp. 292--294. 2005.

[Kin2005a] G.L. Kindlmann, D.M. Weinstein, G.M. Jones, C.R. Johnson, M.R. Capecchi, C. Keller.
**“Practical Vessel Imaging by Computed Tomography in Live Transgenic Mouse Models for Human Tumors,”** In *Journal of Molecular Imaging*, Vol. 4, No. 4, pp. 417--424. 2005.

[Kni2005a] J.M. Kniss, G. Kindlmann, C.D. Hansen.
**“Multidimentional Transfer Functions for Volume Rendering,”** In *The Visualization Handbook*, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 189--210. 2005.

ISBN: 0-12-387582-X

[Lew2005a] S. Lew, C. Wolters, K. Lee, S. Makeig, G. Worrell, R.S. MacLeod.
**“Epileptogenic Source Localization For Open Skull Head Model of Epilepsy By Independent Component Analysis And Inverse Dipole Fit Method,”** In *1st Annual Mountain West Biomedical Engineering Conference*, 2005.

[Liv2005d] Y. Livnat, X. Tricoche.
**“Shadows for Incomplete Point-based Isosurfaces,”** SCI Institute Technical Report, No. UUSCI-2005-001, *University of Utah*, 2005.

[Mac2005a] R.S. MacLeod, B. Yilmaz, B.B. Punske, B. Taccardi, D.H. Brooks.
**“Epicardial Activation Mapping from Multielectrode Venous Catheters,”** In *J. Electrocardiol.*, pp. (in press). 2005.

[Mac2005b] R.S. MacLeod, S. Shome, J.G. Stinstra, B.P. Punske, B. Hopenfeld.
**“Mechanisms of Ischemia-Induced ST-Segment Changes,”** In *J. Electrocardiol.*, Vol. 38(4 Suppl), pp. 8--13. November, 2005.

[Mac2005c] R.S. MacLeod.
**“Mechanisms of ischemia-induced ST-segment changes,”** In *Journal of Electrocardiology*, Vol. 38, No. 4 , Elsevier, pp. 8--13. Oct, 2005.

DOI: 10.1016/j.jelectrocard.2005.06.095

[Mac2005e] R.S. MacLeod, F. Kornreich, A. van Oosterom, P. Rautaharju, R. Selvester, G. Wagner, C. Zywietz.
**“Report of the First Virtual Visualization of the Reconstructed Electrocardiographic Display Symposium,”** In *Journal of Electrocardiology*, Vol. 38, pp. 385--399. 2005.

[Sam2005a] A.A. Samsonov, E.V.R. DiBella, P. Kellman, E.G. Kholmovski, C.R. Johnson.
**“Adaptive k-t BLAST/k-t SENSE for Accelerating Cardiac Perfusion MRI,”** In *Proceedings of the Society for Cardiovascular Magnetic Resonance (SCMR) 8th Annual Scientific Sessions*, pp. 277--278. 2005.

[Sch2005a] G. Scheuermann, X. Tricoche.
**“Topological Methods for Flow Visualization,”** In *The Visualization Handbook*, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 341--356. 2005.

ISBN: 0-12-387582-X

[Ser2005a] Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod.
**“Bayesian Solutions and Performance Analysis in Bioelectric Inverse Problems,”** In *IEEE Trans Biomed. Eng.*, Vol. 52, No. 6, pp. 1009--1020. June, 2005.

[Sti2005a] J.G. Stinstra, D.M. Weinstein, B. Hopenfeld, C.S. Henriquez, R.S. MacLeod.
**“Software Challenges in the New Field of Integrated Cardiac Models,”** In *Proceedings of The Joint Meeting of The 5th International Conference on Bioelectromagnetism and The 5th International Symposium on Noninvasive Functional Source Imaging within the Human Brain and Heart*, Vol. 7, pp. 195--198. 2005.

[Sti2005b] J.G. Stinstra, B. Hopenfeld, R.S. MacLeod.
**“On the Passive Cardiac Conductivity,”** In *Annal. Biomed. Eng.*, Vol. 33, No. 12, pp. 1743--1751. 2005.

[Sti2005c] J.G. Stinstra, S. Shome, B. Hopenfeld, R.S. MacLeod.
**“Modelling Passive Cardiac Conductivity During Ischaemia,”** In *Med. Biol. Eng. Comput.*, Vol. 43, No. 6, pp. 776--782. 2005.

[Tac2005a] B. Taccardi, B.B. Punske, F. Sachse, X. Tricoche, P. Colli-Franzone, L.F. Pavarino, C. Zabawa.
**“Intramural Activation and Repolarization Sequences in Canine Ventricles. Experimental and Simulation Studies,”** In *J. Electrocardiol.*, Vol. 38, No. 4, pp. 131-137. 2005.

[Tas2005a] T. Tasdizen, S.P. Awate, R.T. Whitaker, N. Foster.
**“MRI Tissue Classification with Neighborhood Statistics: A Nonparametric, Entropy-Minimizing Approach,”** In *Proceedings of The 8th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI)*, pp. 517--525. 2005.

PubMed ID: 16685999

[Whi2005a] R.T. Whitaker.
**“Isosurfaces and Level-Sets,”** In *The Visualization Handbook*, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 97--123. 2005.

ISBN: 0-12-387582-X

[Wol2005b] C. H. Wolters, A. Anwander, X. Tricoche, S. Lew, C.R. Johnson.
**“Influence of Local and Remote White Matter Conductivity Anisotropy for a Thalamic Source on EEG/MEG Field and Return Current Computation,”** In *Int.Journal of Bioelectromagnetism*, Vol. 7, No. 1, pp. 203--206. 2005.

[Yil2005a] B. Yilmaz, R.S. MacLeod, B.B. Punske, B. Taccardi, D.H. Brooks.
**“Training Set Selection for Statistical Estimation of Epicardial Activation Mapping from Intravenous Multielectrode Catheters,”** In *IEEE Trans Biomed. Eng.*, pp. (in press). 2005.

[Yil2005b] B. Yilmaz, R.S. MacLeod, B.B. Punske, B. Taccardi, D.H. Brooks.
**“Venous Catheter Based Mapping of Ectopic Epicardial Activation: Training Data Set Selection for Statistical Estimation,”** In *IEEE Trans Biomed Eng*, Vol. 52, No. 11, pp. 1823--1831. November, 2005.

[Zha2005a] S. Zhang, D.H. Laidlaw, G. Kindlmann.
**“Diffusion Tensor MRI Visualization,”** In *The Visualization Handbook*, Edited by C.D. Hansen and C.R. Johnson, Elsevier, pp. 327--340. 2005.

ISBN: 0-12-387582-X

[Bro2004b] D.H. Brooks, A. Ghodrati, Y. Zhang, G. Tadmor, R.S. MacLeod.
**“Inverse Electrocardiography in the Framework of Dynamic Imaging Problems,”** In *Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference*, San Francisco, CA, pp. 3565--3568. September, 2004.

[Cat2004b] J. Cates, R.T. Whitaker, G.M. Jones.
**“Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation,”** No. UUCS-04-006, *University of Utah School of Computing*, 2004.

[Cat2004c] J. Cates, A. Lefohn, R.T. Whitaker.
**“GIST: An Interactive, GPU-Based Level Set Segmentation Tool for 3D Medical Images,”** In *Medical Image Analysis*, Vol. 8, No. 3, pp. 217--231. September, 2004.

[Che2004a] A.B. Cheryauka, J.N. Lee, A.A. Samsonov, M. Defrise, G.T. Gullberg.
**“MRI Diffusion Tensor Reconstruction with PROPELLER Data Acquisition,”** In *J. Mag. Res. Imag.*, Vol. 22, No. 2, pp. 139--148. 2004.

[Gar2004a] C. Garth, X. Tricoche, G. Scheuermann.
**“Tracking of Vector Field Singularities in Unstructured 3D Time-Dependent Datasets,”** In *Proceeding of IEEE Visualization 2004*, pp. 329--336. 2004.

[Gar2004b] C. Garth, X. Tricoche, T. Salzbrunn, T. Bobach, G. Scheuermann.
**“Surface Techniques for Vortex Visualization,”** In *Proceedings of Joint Eurographics - IEEE TCVG Symposium on Visualization*, pp. 155--164. May, 2004.

[Gho2004a] A. Ghodrati, D.H. Brooks, R.S. MacLeod.
**“On Selecting and Using Reduced Sets of Leads for Electrocardiographic Imaging Using Reconstruction-Quality Criteria,”** In *Proceedings of The SIAM Conference on Imaging Science 2004*, Salt Lake City, UT, Note: *abstract.*, May, 2004.

[Gho2004b] A. Ghodrati, F. Calderero, D.H. Brooks, G. Tadmor, R.S. MacLeod.
**“A Level Sets Algorithm for the Inverse Problem of Electrocardiography,”** In *Proceedings of the Asilomar Conf. on Sig. and Sys.*, Vol. 2, pp. 1590--1594. November, 2004.

[Hen2004a] C.S. Henriquez, J.V. Tranquillo, D.M. Weinstein, E.W. Hsu, C.R. Johnson.
**“Three-dimensional Propagation in Mathematic Models: Integrative Model of the Mouse Heart,”** In *Cardiac Electrophysiology: From Cell to Bedside*, 4th edition, Ch. 30, Edited by D.P. Zipes and J. Jalife, Saunders, pp. 273--281. 2004.

[Hop2004a] B. Hopenfeld, J.G. Stinstra, R.S. MacLeod.
**“Mechanism for ST Depression Associated with Contiguous Subendocardial Ischemia,”** In *J. Cardiovasc. Electrophysiol.*, Vol. 15, No. 10, pp. 1200--1206. 2004.

[Joh2004a] C.R. Johnson.
**“Top Scientific Visualization Research Problems,”** In *IEEE Computer Graphics and Applications: Visualization Viewpoints*, Vol. 24, No. 4, pp. 13--17. July/August, 2004.

[Kin2004a] G Kindlmann.
**“Superquadric Tensor Glyphs,”** In *Proceeding of The Joint Eurographics - IEEE TCVG Symposium on Visualization 2004*, pp. 147--154. May, 2004.

[Kin2004b] G.L. Kindlmann, D.M. Weinstein, A.D. Lee, A.W. Toga, P.M. Thompson.
**“Visualization of Anatomic Covariance Tensor Fields,”** In *Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference*, 2004.

[Kni2004a] J.M. Kniss, J.P. Schulze, U. Wössner, P. Winkler, U. Lang, C.D. Hansen.
**“Medical Applications of Multi-field Volume Rendering and VR Techniques,”** In *Proceeding of The Joint Eurographics - IEEE TCVG Symposium on Visualization 2004*, pp. 249--254. 2004.

[Lef2004a] A.E. Lefohn, J.M. Kniss, C.D. Hansen, R.T. Whitaker.
**“A Streaming Narrow-Band Algorithm: Interactive Deformation and Visualization of Level Sets,”** In *IEEE Trans. Vis & Comp. Graph.*, pp. 422--433. 2004.

[Liv2004a] Y. Livnat, X. Tricoche.
**“Interactive Point Based Isosurface Extraction,”** In *Proceeding of IEEE Visualization 2004*, pp. 457--464. 2004.

[Mac2004a] R.S. Macleod, D.M. Weinstein, J.D. de St. Germain, D.H. Brooks, C.R. Johnson, S.G. Parker.
**“SCIRun/BioPSE: Integrated Problem Solving Environment for Bioelectric Field Problems and Visualization,”** In *Proceedings of the Int. Symp. on Biomed. Imag.*, Arlington, Va, pp. 640--643. April, 2004.

[Sam2004e] A.A. Samsonov, E.G. Kholmovski, C.R. Johnson.
**“Phase-Constrained Reconstruction of Sensitivity-Encoded MRI Data with POCSENSE,”** In *Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM)*, Kyoto, Japan, pp. 2647. 2004.

[Sam2004f] A.A. Samsonov, C.R. Johnson.
**“Noise-Adaptive Nonlinear Diffusion Filtering of MR Images with Spatially Varying Noise Levels,”** In *Magn. Reson. Med.*, Vol. 52, pp. 798--806. 2004.

[Sam2004g] A.A. Samsonov, E.G. Kholmovski, D.L. Parker, C.R. Johnson.
**“POCSENSE: POCS-based reconstruction for sensitivity encoded MRI,”** In *Magn. Reson. Med.*, Vol. 52, pp. 1397--1406. 2004.

[Sam2004h] A.A. Samsonov, C.R. Johnson.
**“Multicoil MRI Artifacts Correction Using Parallel Pocs,”** In *Proceedings of The 12th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM)*, 2004.

[San2004a] A.R. Sanderson, C.R. Johnson, R.M. Kirby.
**“Display of Vector Fields Using a Reaction Diffusion Model,”** In *Proceeding of IEEE Visualization 2004*, pp. 115--122. 2004.

[Sch2004a] U. Schmitt, C.H. Wolters, A. Anwander, T. Knoesche.
**“STR: A New Spatio-Temporal Approach for Accurate and Efficient Current Density Reconstruction,”** In *Proceedings of The 14th International Conference on Biomagnetism*, pp. 591--592. 2004.

[Tas2004a] T. Tasdizen, D.M. Weinstein, J.N. Lee.
**“Automatic Tissue Classification for the Human Head from Multispectral MRI,”** SCI Institute Technical Report, No. UUSCI-2004-001, *University of Utah*, March, 2004.

[Tas2004b] T. Tasdizen, R.T. Whitaker.
**“Higher-order nonlinear priors for surface reconstruction,”** In *IEEE Trans. Pattern Anal. & Mach. Intel.*, Vol. 26, No. 7, pp. 878--891. July, 2004.

[Tri2004a] X. Tricoche, C. Garth, G. Kindlmann, E. Deines, G. Scheuermann, Markus Ruetten, Charles D. Hansen.
**“Visualization of Intricate Flow Structures for Vortex Breakdown Analysis,”** In *Proceeding of IEEE Visualization 2004*, pp. 187--194. 2004.

[Wol2004a] C.H. Wolters, L. Grasedyck, A. Anwander, H. Hackbusch.
**“Efficient Computation of Lead Field Bases and Influence Matrix for the FEM-Based EEG and MEG Inverse Problem,”** In *Proceedings of The 14th International Conference on Biomagnetism*, Boston, MA, pp. 104--107. August, 2004.

[Wol2004b] C.H. Wolters, L. Grasedyck, W. Hackbusch.
**“Efficient Computation of Lead Field Bases and Influence Matrix for the FEM-Based EEG and MEG Inverse Problem,”** In *Inverse Problems*, Vol. 20, No. 4, pp. 1099--1116. 2004.

[Wol2004c] C.H. Wolters, A. Anwander, B. Maess, R.S. MacLeod, A.D. Friederici.
**“The Influence of Volume Conduction Effects on the EEG/MEG Reconstruction of the Sources of the Early Left Anterior Negativity,”** In *Proceedings of the IEEE Engineering in Medicine and Biology Society 26th Annual International Conference*, San Francisco, CA, Vol. 5, pp. 3569--3572. September, 2004.

[Wol2004d] C.H. Wolters, A. Anwander, S. Reitzinger, G. Haase.
**“Algebraic Multigrid with Multiple Right-Hand-Side Treatment for an Efficient Computation of EEG and MEG Lead Field Bases,”** In *Proceedings of The 14th International Conference on Biomagnetism*, Boston, MA, pp. 465--466. August, 2004.

[Wol2004e] C.H. Wolters, A. Anwander, S. Reitzinger, G. Haase.
**“Avoiding the Problem of FE Meshing: A Parallel Algebraic Multigrid with Multiple Right-Hand Side Treatment for an Efficient and Memory-Economical Computation of High Resolution EEG and MEG Lead Field Bases,”** In *poster*, September, 2004.

[Col2003a] M. Cole, S.G. Parker.
**“Dynamic Compilation of C++ Template Code,”** In *Scientific Programming*, Vol. 11, IOS Press, pp. 321--327. 2003.

[Cor2003a] A. Corlan, R.S. MacLeod, L.D. Ambroggi.
**“Low Variability of Autocorrelation Maps with Intrathoracic Heart Position,”** In *Int. J. Bioelectromag.*, Vol. 5, No. 1, pp. 139--140. 2003.

[Ser2003a] Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod.
**“Prior Model Selection for Bayesian Inverse Electrocardiography,”** In *Proceedings of the NFSI Conference 2003*, Chieti, Italy, 2003.

[Ser2003b] Y. Serinagaoglu, R.S. MacLeod, D.H. Brooks.
**“A Bayesian Approach to Inclusion and Performance Analysis of Using Extra Information in Bioelectric Inverse Problems,”** In *Proceedings of the IEEE International Conference on Image Processing*, 2003.

[Ser2003c] Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod.
**“Combining Numerical and Physiological Constraints in Inverse Electrocardiography,”** In *Int. J. Bioelectromag.*, Vol. 5, No. 1, pp. 215--217. 2003.

[Sti2003a] J.G. Stinstra, B. Hopenfeld, R.S. MacLeod.
**“A Model for the Passive Cardiac Conductivity,”** In *Int. J. Bioelectromag.*, Vol. 5, No. 1, pp. 185--186. 2003.

[Wei2003b] D.M. Weinstein, J.V. Tranquillo, C.S. Henriquez, C.R. Johnson.
**“BioPSE Case Study: Modeling, Simulation, and Visualization of Three Dimensional Mouse Heart Propagation,”** In *International Journal of Bioelectromagnetism*, Vol. 5, No. 1, pp. 314--315. 2003.

[Zyp2003a] K. Zyp.
**“The Transfer Operator for Multigrid on Inverse Bioelectric Field Problems,”** SCI Institute Technical Report, No. UUSCI-2003-001, Note: *Masters thesis*, *University of Utah*, May, 2003.

[Joh2002a] C.R. Johnson, S.G. Parker, D. Weinstein, S. Heffernan.
**“Component-Based Problem Solving Environments for Large-Scale Scientific Computing,”** In *J. Conc. & Comp.: Prac. & Exper.*, Vol. 14, pp. 1337--1349. 2002.

[Kho2002a] E.G. Kholmovski, A.A. Samsonov, D.L. Parker.
**“POCSENSE: POCS-based method for reconstruction from sensitivity-encoded data,”** In *Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM)*, Honolulu, pp. 194. 2002.

[Kho2002b] E.G. Kholmovski, A.A. Samsonov, D.L. Parker.
**“Motion Artifact Reduction Technique for Dual Contrast FSE Imaging,”** In *Magnetic Resonance Imaging*, Vol. 20, No. 6, pp. 455--462. 2002.

[Mac2002a] R.S. MacLeod, Q. Ni, B. Taccardi.
**“Modeling Cardiac Bioelectricity in Realistic Volumes: How Real is Real?,”** In *Einthoven 2002*, Leiden, Edited by M.J. Schalij and M.J. Janse and A. van Oosterom and H.J.J. Wellens and E.E. van der Wall, *The Einthoven Foundation*, pp. 45-56. 2002.

[Mac2002b] R.S. MacLeod, E.D. DiBella, B.B. Punske, E.K. Jeong.
**“Multimodal Imaging of Cardiac Activation, Perfusion, and Ischemia,”** In *14th Annual Research Symposium of the Medical Imaging Research Laboratory*, 2002.

[Qua2002a] H.W. Quartero, J.G. Stinstra, E.G. Golbach, E.J. Meijboom, M.J. Peters.
**“Clinical Implications of Fetal Magnetocardiography,”** In *Ultrasound Obstet Gynecol*, Vol. 20, No. 2, pp. 142--153. 2002.

[Sam2002d] A.A. Samsonov, E.G. Kholmovski.
**“Method for Quality Improvement of Images Reconstructed From Sensitivity-Encoded Data,”** In *Proceedings of The 10th Annual Scientific Meeting of The International Society for Magnetic Resonance in Medicine (ISMRM)*, Honolulu, pp. 2408. 2002.

[Ser2002a] Y. Serinagaoglu, D.H. Brooks, R.S. MacLeod.
**“Including Sparse Noisy Epicardial Potential Measurements Into Bayesian Inverse Electrocardiography,”** In *Proceedings of EMBC 2002*, 2002.

[Ser2002b] Y. Serinagaoglu, R.S. MacLeod, B. Yilmaz, D.H. Brooks.
**“Multielectrode Venous Catheter Mapping as a High Quality Constraint for Electrocardiographic Inverse Solution,”** In *J. Electrocardiol.*, Vol. 35 (supplement), 2002.

[Sti2002a] J. Stinstra, M. Peters.
**“The Influence of Fetoabdominal Tissues on Fetal ECGs and MCGs,”** In *Arch Physiol Biochem*, Vol. 110, No. 3, pp. 165--176. 2002.

[Tac2002a] B. Taccardi, B.B. Punske, R.S. MacLeod, Q. Ni.
**“Visualization, Analysis and Physiological Interpretation of Three-dimentional Cardiac Electric Fields,”** In *Proceedings of 24th Annual International Conference of the IEEE Engineering in Medicine and Biology Society*, 2002.

[Uit2002b] R. Van Uitert, C.R. Johnson.
**“Can a Spherical Model Substitute for a Realistic Head Model in Forward and Inverse MEG Simulations?,”** In *Proceedings of The 13th International Conference on Biomagnetism*, Jena, Germany, August, 2002.

[But2001a] C.R. Butson.
**“From Action Potentials to Surface Potentials,”** In *Multilevel Neuronal Modeling Workshop*, Edinburgh, Scotland, May, 2001.

[Gum2001a] S. Gumhold, X. Wang, R.S. MacLeod.
**“Feature Extraction from Point Clouds,”** In *Proceedings, 10th International Meshing Round Table*, Sandia National Laboratories, pp. 293--305. 2001.

[Joh2001a] C.R. Johnson, D. Brederson, C.D. Hansen, M. Ikits, G. Kindlmann, Y. Livnat, S.G. Parker, D.M. Weinstein, R.T. Whitaker.
**“Computational Field Visualization,”** In *Computer Graphics*, Vol. 35, No. 4, pp. 5--9. 2001.

[Joh2001c] C.R. Johnson, M. Mohr, U. Ruede, A. Samsonov, K. Zyp.
**“Multilevel Methods for Inverse Bioelelectric Field Problems,”** In *Lecture Notes in Computational Science and Engineering - Multiscale and Multiresolution Methods: Theory and Applications*, Vol. 20, Edited by T.J. Barth and T.F. Chan and R. Haimes, Springer-Verlag Publishing, Heidelberg pp. 331--346. October, 2001.

[Joh2001d] C.R. Johnson.
**“Adaptive Finite Element and Local Regularization Methods for the Inverse ECG Problem,”** In *Inverse Problems in Electrocardiology*, Advances in Computational Biomedicine, Vol. 5, Edited by Peter Johnston, WIT Press, pp. 51--88. 2001.

[Joh2001e] C.R. Johnson.
**“Computational Bioimaging for Medical Diagnosis and Treatment,”** In *Communications of the ACM*, Vol. 44, No. 3, pp. 74--76. March, 2001.

[Mac2001a] R.S. MacLeod, B. Yilmaz, B. Taccardi, B.B. Punske, Y. Serina, D.H. Brooks.
**“Direct and Inverse Methods for Cardiac Mapping Using Multielectrode Catheter Measurements,”** In *Journal of Biomedizinische Technik*, Vol. 46(supp), pp. 207--209. 2001.

[Mac2001b] R.S. MacLeod, B.B. Punske, B. Yilmaz, S. Shome, B. Taccardi.
**“The Role of Heart Rate in Myocardial Ischemia From Restricted Coronary Perfusion,”** In *J. Electrocardiol.*, Vol. 34 (supp), Note: *ISCE conference paper*, pp. 43--51. 2001.

[Por2001a] O. Portniaguine, D.M. Weinstein, C.R. Johnson.
**“Focusing Inversion of Electroencephalography and Magnetoencephalography Data,”** In *3rd International Symposium On Noninvasive Functional Source Imaging*, Journal of Biomedizinische Technik (special issue), Vol. 46, Innsbruck, Austria pp. 115--117. Sep, 2001.

[Tac2001a] B. Taccardi, B.B. Punske, R.S. MacLeod, Q. Ni.
**“Extracardiac Effects of Myocardial Electrical Anisotropy,”** In *Biomed. Technik*, Vol. 46(suppl 2), pp. 216--218. 2001.

[Uit2001] R. Van Uitert, D. Weinstein, C.R. Johnson, L. Zhukov.
**“Finite Element EEG and MEG Simulations for Realistic Head Models: Quadratic vs. Linear Approximations,”** In *Biomed. Technik*, Vol. 46, pp. 32--34. 2001.

[Wei2001a] D. Weinstein, O. Portniaguine, L. Zhukov.
**“A Comparison of Dipolar and Focused Inversion for EEG Source Localization,”** In *Biomed. Technik*, Vol. 46 (special issue), pp. 121--123. Sep, 2001.

[Zhu2001] L. Zhukov, D.M. Weinstein, C.R. Johnson, R.S. Macleod.
**“Spatio-temporal Multi-dipole Source Localization Using ICA and Lead-Fields in FEM Head Models,”** In *Proceedings of the IEEE Engineering in Medicine and Biology Society 23rd Annual International Conference*, Istanbul, Turkey Oct, 2001.

[Joh2000b] C.R. Johnson, S.G. Parker, D. Weinstein.
**“Large-Scale Computational Science Applications Using the SCIRun Problem Solving Environment,”** In *Proceedings of The International Supercomputer Conference 2000*, 2000.

[Kin2000] G.L. Kindlmann, D.M. Weinstein, D. Hart.
**“Strategies for Direct Volume Rendering of Diffusion Tensor Fields,”** In *IEEE Trans. Vis & Comp. Graph.*, Vol. 6, No. 2, pp. 124--138. April-June, 2000.

[Liv2000] Y. Livnat, S.G. Parker, C.R. Johnson.
**“Fast Isosurface Extraction Methods for Large Image Data Sets,”** In *Handbook of Medical Imaging*, Edited by A.N. Bankman, Academic Press, San Diego, CA pp. 731--745. Nov, 2000.

[Wei2000a] D.M. Weinstein, L. Zhukov, G. Potts.
**“Localization of Multiple Deep Epileptic Sources in a Realistic Head Model via Independent Component Analysis,”** School of Computing Technical Report, No. UUCS-2000-004, *University of Utah*, February, 2000.

[Wei2000b] D.M. Weinstein, L. Zhukov, C.R. Johnson.
**“Lead-Field Bases for EEG Source Imaging,”** In *Annal. Biomed. Eng.*, Vol. 28, No. 9, pp. 1059--1065. Sep, 2000.

[Wei2000c] D. Weinstein.
**“Scanline Surfacing: Building Separating Surfaces from Planar Contours,”** In *Proceeding of IEEE Visualization 2000*, pp. 283--289. 2000.

[Wei2000d] D.M. Weinstein, L. Zhukov, C.R. Johnson.
**“An Inverse EEG Problem Solving Environment and its Applications to EEG Source Localization,”** In *NeuroImage (suppl.)*, pp. 921. 2000.

[Wei2000f] D.M. Weinstein, L. Zhukov, C.R. Johnson, S.G. Parker, R. Van Uitert, R.S. MacLeod, C.D. Hansen.
**“Interactive Source Imaging with BioPSE,”** In *Chicago 2000 World Congress on Medical Physics and Biomedical Engineering*, Chicago, IL., Note: *Refereed abstract.*, July, 2000.

[Wei2000g] D.M. Weinstein, P. Krysl, C.R. Johnson.
**“The BioPSE Inverse EEG Modeling Pipeline,”** In *ISGG 7th International Conference on Numerical Grid Generation in Computation Field Simulations*, The International Society of Grid Generation, Mississippi State University pp. 1091--1100. 2000.

[Zhu2000a] L. Zhukov, D. Weinstein, C.R. Johnson.
**“Statistical Analysis For FEM EEG Source Localization in Realistic Head Models,”** School of Computing Technical Report, No. UUCS-2000-003, *University of Utah*, February, 2000.

[Zhu2000b] L. Zhukov, D.M. Weinstein, C.R. Johnson.
**“Reciprocity Basis for EEG Source Imaging,”** In *NeuroImage (suppl.)*, pp. 598. 2000.

[Zhu2000c] L. Zhukov, D. Weinstein, C.R. Johnson.
**“Independent Component Analysis for EEG Source Localization in Realistic Head Models,”** In *IEEE Engineering in Medicine and Biology*, Vol. 19, No. 3, pp. 87--96. 2000.

[Bro1999a] D.H. Brooks, G.F. Ahmad, R.S. MacLeod, G.M. Maratos.
**“Inverse Electrocardiography by Simultaneous Imposition of Multiple Constraints,”** In *IEEE Trans Biomed. Eng.*, Vol. 46, No. 1, pp. 3--18. 1999.

[Joh99c] C.R. Johnson, S.G. Parker, C.D. Hansen, G.L. Kindlmann, Y. Livnat.
**“Interactive Simulation and Visualization,”** In *IEEE Computer*, Vol. 32, No. 12, pp. 59--65. Dec, 1999.

[Mil1999a] M. Miller, C.D. Hansen, C.R. Johnson.
**“The SCIRun Problem Solving Environment: Implementation within a Distributed Environment,”** In *Ninth SIAM Conference on Parallel Processing for Scientific Computing*, Note: *extended abstract*, 1999.

[Wei1999c] D.M. Weinstein, L. Zhukov, C.R. Johnson.
**“Lead Field Basis for FEM Source Localization,”** School of Computing Technical Report, No. UUCS-99-014, *University of Utah*, Salt Lake City, UT October, 1999.

[Zhu99a] L. Zhukov, D.M. Weinstein, C.R. Johnson.
**“Independent Component Analysis For EEG Source Localization In Realistic Head Models,”** In *Third International Conference on Inverse Problems in Engineering*, 1999.

[Joh1992e] C.R. Johnson, R.S. MacLeod, P.R. Ershler.
**“A Computer Model for the Study of Electrical Current Flow in the Human Thorax,”** In *Computers in Biology and Medicine*, Vol. 22, No. 5, Elsevier BV, pp. 305--323. 1992.